CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Quercus robur x Quercus petraea-Genetic_11PxQs29_2009  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG4Ma
Start
Stop
Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
AFLP
EST_SSR
gSSR
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 [ View Map Set Info ]
Map Name: LG4Ma
Map Start: 0.00 cM
Map Stop: 51.43 cM
Features by Type:
1 EST_SSR
1 gSSR
2 AFLP
4 Total

Map Features

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Items 1 to 4 of 4.
Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG4Ma
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
E-AAC/M-CTT-291/1 AFLP 0.00 No other positions
TCS14 gSSR 23.77 Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG4Fa TCS14 gSSR 12.24 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG2M TCS14 gSSR 40.94 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG4M TCS14 gSSR 12.65 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG4Mb TCS14 gSSR 29.00 (cM) Automated name-based View Maps
Quercus robur - Genetic_3PxA4_2007 - LG4M TCS14 gSSR 87.86 (cM) Automated name-based View Maps
Castanea sativa - QTL_BursaxHoppa_2009_Bud_pheno - LG2F TCS14 gSSR 81.10 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG2F TCS14 gSSR 4.06 (cM) Automated name-based View Maps
Quercus robur - Genetic_AltFxAltM_2009 - LG4F TCS14 gSSR 0.00 (cM) Automated name-based View Maps
PIE176 EST_SSR 33.09 Quercus robur x Quercus petraea - Genetic_11PxQs29_2009 - LG4Fa PIE176 EST_SSR 26.48 (cM) Automated name-based View Maps
Castanea sativa - Genetic_BursaxHoppa_2009 - LG5M PIE176 EST_SSR 4.11 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2011 - LG4Mb PIE176 EST_SSR 19.31 (cM) Automated name-based View Maps
Quercus robur x Quercus petraea - Genetic_11PxQs29_2011 - LG4Fb PIE176 EST_SSR 12.99 (cM) Automated name-based View Maps
Quercus petraea - Genetic_Qs28xQs21_2009 - LG4Mb PIE176 EST_SSR 17.54 (cM) Automated name-based View Maps
E-AAG/M-CTT-229/2 AFLP 51.43 No other positions

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