CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-G2_G2F_2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG1F
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
eSSR
EST
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - G2_G2F_2012 [ View Map Set Info ]
Map Name: LG1F
Map Start: 0.00 cM
Map Stop: 124.02 cM
Features by Type:
1 EST
84 SNP
2 eSSR
87 Total

Map Features

Restrict by Map:
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Items 1 to 25 of 87.       of 4 | Next
Pinus pinaster - G2_G2F_2012 - LG1F
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
F51TW9001A34NZ SNP 0.00 Pinus pinaster - INIA_INRA2012 - LG1 F51TW9001A34NZ SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 F51TW9001A34NZ SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG1 F51TW9001A34NZ SNP 0.00 (cM) Automated name-based View Maps
m289 SNP 3.44 Pinus pinaster - INIA_INRA2012 - LG1 m289 SNP 7.17 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 m289 SNP 3.44 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG1 m289 SNP 7.17 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG1 m289 SNP 0.20 (cM) Automated name-based View Maps
BX253724 SNP 3.48 Pinus pinaster - INRA_composite_2012 - LG1 BX253724 SNP 3.92 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 BX253724 SNP 7.65 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG1 BX253724 SNP 0.68 (cM) Automated name-based View Maps
BX676894 SNP 5.93 Pinus pinaster - INRA_composite_2012 - LG1 BX676894 SNP 6.37 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 BX676894 SNP 10.10 (cM) Automated name-based View Maps
BX251336 SNP 5.93 Pinus pinaster - INRA_composite_2012 - LG1 BX251336 SNP 6.37 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG1 BX251336 SNP 16.72 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 BX251336 SNP 10.10 (cM) Automated name-based View Maps
BX249345 SNP 5.93 Pinus pinaster - INRA_composite_2012 - LG1 BX249345 SNP 6.37 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 BX249345 SNP 11.54 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG1 BX249345 SNP 17.96 (cM) Automated name-based View Maps
BX253606 SNP 5.93 Pinus pinaster - INIA_INRA2012 - LG1 BX253606 SNP 10.10 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 BX253606 SNP 6.37 (cM) Automated name-based View Maps
ssr_NZPR472 eSSR 8.02 Pinus pinaster - INIA_INRA2012 - LG1 ssr_NZPR472 eSSR 11.54 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 ssr_NZPR472 eSSR 8.46 (cM) Automated name-based View Maps
F51TW9001AI30K SNP 8.40 Pinus pinaster - INRA_composite_2012 - LG1 F51TW9001AI30K SNP 8.84 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 F51TW9001AI30K SNP 11.92 (cM) Automated name-based View Maps
BX255626 SNP 9.62 Pinus pinaster - INIA_INRA2012 - LG1 BX255626 SNP 13.14 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG1 BX255626 SNP 12.17 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG1 BX255626 SNP 17.96 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 BX255626 SNP 10.06 (cM) Automated name-based View Maps
CT577538 SNP 9.62 Pinus pinaster - INIA_INRA2012 - LG1 CT577538 SNP 13.14 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 CT577538 SNP 10.06 (cM) Automated name-based View Maps
CT583014 SNP 9.62 Pinus pinaster - INRA_composite_2012 - LG1 CT583014 SNP 10.06 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 CT583014 SNP 13.14 (cM) Automated name-based View Maps
AL750400 SNP 18.16 Pinus pinaster - INRA_composite_2012 - LG1 AL750400 SNP 18.58 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 AL750400 SNP 23.79 (cM) Automated name-based View Maps
BX255070 SNP 20.66 Pinus pinaster - INIA_composite_2012 - LG1 BX255070 SNP 34.14 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 BX255070 SNP 21.08 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG1 BX255070 SNP 23.19 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 BX255070 SNP 32.19 (cM) Automated name-based View Maps
CT576765 SNP 20.66 Pinus pinaster - INIA_INRA2012 - LG1 CT576765 SNP 32.19 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG1 CT576765 SNP 34.14 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 CT576765 SNP 21.08 (cM) Automated name-based View Maps
m816 SNP 31.06 Pinus pinaster - INIA_composite_2012 - LG1 m816 SNP 39.23 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG1 m816 SNP 31.10 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 m816 SNP 28.99 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 m816 SNP 37.85 (cM) Automated name-based View Maps
CT575003 SNP 40.39 Pinus pinaster - INIA_INRA2012 - LG1 CT575003 SNP 44.12 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG1 CT575003 SNP 42.75 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 CT575003 SNP 38.32 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG1 CT575003 SNP 46.60 (cM) Automated name-based View Maps
ssr_FRPp91 eSSR 42.38 Pinus pinaster - INIA_INRA2012 - LG1 ssr_FRPp91 eSSR 44.12 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 ssr_FRPp91 eSSR 38.35 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG1M ssr_FRPp91 eSSR 29.69 (cM) Automated name-based View Maps
AL749711 SNP 52.33 Pinus pinaster - INRA_composite_2012 - LG1 AL749711 SNP 48.30 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 AL749711 SNP 54.07 (cM) Automated name-based View Maps
m897 SNP 54.85 Pinus pinaster - INIA_INRA2012 - LG1 m897 SNP 59.48 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 m897 SNP 50.82 (cM) Automated name-based View Maps
m896 SNP 54.85 Pinus pinaster - INRA_composite_2012 - LG1 m896 SNP 50.82 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 m896 SNP 63.89 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG1 m896 SNP 66.93 (cM) Automated name-based View Maps
CT577086 SNP 58.42 Pinus pinaster - F2_H12_2012 - LG1 CT577086 SNP 54.35 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 CT577086 SNP 67.45 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 CT577086 SNP 54.38 (cM) Automated name-based View Maps
CT576691 SNP 59.61 Pinus pinaster - INIA_INRA2012 - LG1 CT576691 SNP 70.49 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 CT576691 SNP 57.42 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG1 CT576691 SNP 57.39 (cM) Automated name-based View Maps
BX252921 SNP 62.09 Pinus pinaster - INIA_INRA2012 - LG1 BX252921 SNP 73.80 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 BX252921 SNP 59.90 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG1 BX252921 SNP 59.41 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG1 BX252921 SNP 75.20 (cM) Automated name-based View Maps
CT575163 SNP 63.34 Pinus pinaster - INIA_composite_2012 - LG1 CT575163 SNP 74.37 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 CT575163 SNP 61.15 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 CT575163 SNP 73.80 (cM) Automated name-based View Maps

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