CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-G2_G2F_2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG2F
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
eSSR
EST
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - G2_G2F_2012 [ View Map Set Info ]
Map Name: LG2F
Map Start: 0.00 cM
Map Stop: 130.58 cM
Features by Type:
1 EST
94 SNP
1 eSSR
96 Total

Map Features

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Items 1 to 25 of 96.       of 4 | Next
Pinus pinaster - G2_G2F_2012 - LG2F
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
CT579016 SNP 0.00 Pinus pinaster - F2_H12_2012 - LG2 CT579016 SNP 1.69 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG2 CT579016 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG2 CT579016 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG2 CT579016 SNP 0.00 (cM) Automated name-based View Maps
m943 SNP 4.19 Pinus pinaster - INIA_INRA2012 - LG2 m943 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG2 m943 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG2 m943 SNP 0.00 (cM) Automated name-based View Maps
CT580167 SNP 4.59 Pinus pinaster - INRA_composite_2012 - LG2 CT580167 SNP 5.33 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG2 CT580167 SNP 5.64 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG2 CT580167 SNP 5.61 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG2 CT580167 SNP 4.37 (cM) Automated name-based View Maps
AL749753 SNP 4.59 Pinus pinaster - INRA_composite_2012 - LG2 AL749753 SNP 3.65 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG2 AL749753 SNP 3.96 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG2 AL749753 SNP 4.37 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG2 AL749753 SNP 3.94 (cM) Automated name-based View Maps
BX679946 SNP 4.59 Pinus pinaster - F2_H12_2012 - LG2 BX679946 SNP 1.69 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG2 BX679946 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG2 BX679946 SNP 1.46 (cM) Automated name-based View Maps
CR393927 SNP 4.59 Pinus pinaster - INRA_composite_2012 - LG2 CR393927 SNP 5.33 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG2 CR393927 SNP 5.61 (cM) Automated name-based View Maps
m37 SNP 5.05 Pinus pinaster - INRA_composite_2012 - LG2 m37 SNP 5.78 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG2 m37 SNP 6.06 (cM) Automated name-based View Maps
CT582330 SNP 5.85 Pinus pinaster - INIA_INRA2012 - LG2 CT582330 SNP 6.86 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG2 CT582330 SNP 6.58 (cM) Automated name-based View Maps
m192 SNP 17.35 Pinus pinaster - INIA_INRA2012 - LG2 m192 SNP 22.32 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG2 m192 SNP 24.70 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG2 m192 SNP 25.02 (cM) Automated name-based View Maps
CT575140 SNP 19.76 Pinus pinaster - INRA_composite_2012 - LG2 CT575140 SNP 28.76 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG2 CT575140 SNP 30.25 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG2 CT575140 SNP 26.34 (cM) Automated name-based View Maps
F51TW9001BL29E SNP 21.09 Pinus pinaster - INIA_composite_2012 - LG2 F51TW9001BL29E SNP 32.58 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG2 F51TW9001BL29E SNP 26.34 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG2 F51TW9001BL29E SNP 28.76 (cM) Automated name-based View Maps
m589 SNP 23.33 Pinus pinaster - F2_H12_2012 - LG2 m589 SNP 32.26 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG2 m589 SNP 28.58 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG2 m589 SNP 31.00 (cM) Automated name-based View Maps
m89 SNP 23.65 Pinus pinaster - INRA_composite_2012 - LG2 m89 SNP 31.00 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG2 m89 SNP 31.77 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG2 m89 SNP 28.58 (cM) Automated name-based View Maps
BX681311 SNP 24.66 Pinus pinaster - INRA_composite_2012 - LG2 BX681311 SNP 33.66 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG2 BX681311 SNP 29.07 (cM) Automated name-based View Maps
F51TW9002JVZ5H SNP 25.89 Pinus pinaster - INIA_INRA2012 - LG2 F51TW9002JVZ5H SNP 32.69 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG2 F51TW9002JVZ5H SNP 37.28 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG2 F51TW9002JVZ5H SNP 38.77 (cM) Automated name-based View Maps
F51TW9001D58WX SNP 27.13 Pinus pinaster - INIA_composite_2012 - LG2 F51TW9001D58WX SNP 43.26 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG2 F51TW9001D58WX SNP 40.70 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG2 F51TW9001D58WX SNP 45.59 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG2 F51TW9001D58WX SNP 36.11 (cM) Automated name-based View Maps
ssr_NZPR1078 eSSR 31.64 Pinus pinaster - INIA_INRA2012 - LG2 ssr_NZPR1078 eSSR 36.11 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG2 ssr_NZPR1078 eSSR 45.21 (cM) Automated name-based View Maps
AL750427 SNP 33.69 Pinus pinaster - INRA_composite_2012 - LG2 AL750427 SNP 47.26 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG2 AL750427 SNP 51.59 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG2 AL750427 SNP 36.11 (cM) Automated name-based View Maps
F51TW9001CWBA6 SNP 37.23 Pinus pinaster - INRA_composite_2012 - LG2 F51TW9001CWBA6 SNP 50.80 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG2 F51TW9001CWBA6 SNP 37.49 (cM) Automated name-based View Maps
BX249296 SNP 37.23 Pinus pinaster - INRA_composite_2012 - LG2 BX249296 SNP 50.80 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG2 BX249296 SNP 37.49 (cM) Automated name-based View Maps
F51TW9002JSTN9 SNP 39.51 Pinus pinaster - INIA_INRA2012 - LG2 F51TW9002JSTN9 SNP 37.49 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG2 F51TW9002JSTN9 SNP 44.61 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG2 F51TW9002JSTN9 SNP 53.08 (cM) Automated name-based View Maps
estPsUF1_CHS EST 43.14 Pinus pinaster - INIA_INRA2012 - LG2 estPsUF1_CHS EST 39.31 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG2 estPsUF1_CHS EST 56.71 (cM) Automated name-based View Maps
m161 SNP 44.20 Pinus pinaster - INIA_composite_2012 - LG2 m161 SNP 46.53 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG2 m161 SNP 39.41 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG2 m161 SNP 57.77 (cM) Automated name-based View Maps
384_CHS SNP 44.23 Pinus pinaster - INIA_INRA2012 - LG2 384_CHS SNP 40.40 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG2 384_CHS SNP 47.52 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG2 384_CHS SNP 57.80 (cM) Automated name-based View Maps
BX678760 SNP 44.23 Pinus pinaster - INRA_composite_2012 - LG2 BX678760 SNP 57.80 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG2 BX678760 SNP 39.44 (cM) Automated name-based View Maps

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