CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-G2_G2F_2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG3F
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
eSSR
EST
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - G2_G2F_2012 [ View Map Set Info ]
Map Name: LG3F
Map Start: 0.00 cM
Map Stop: 128.93 cM
Features by Type:
2 EST
83 SNP
3 eSSR
88 Total

Map Features

Restrict by Map:
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Items 1 to 25 of 88.       of 4 | Next
Pinus pinaster - G2_G2F_2012 - LG3F
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
FN694995 SNP 0.00 Pinus pinaster - INIA_composite_2012 - LG3 FN694995 SNP 3.42 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 FN694995 SNP 6.82 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 FN694995 SNP 5.52 (cM) Automated name-based View Maps
F51TW9001AUALQ SNP 12.61 Pinus pinaster - INIA_composite_2012 - LG3 F51TW9001AUALQ SNP 23.32 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 F51TW9001AUALQ SNP 22.31 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 F51TW9001AUALQ SNP 18.13 (cM) Automated name-based View Maps
BX249539 SNP 13.81 Pinus pinaster - INRA_composite_2012 - LG3 BX249539 SNP 19.33 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 BX249539 SNP 23.70 (cM) Automated name-based View Maps
F51TW9001CCHJH SNP 15.06 Pinus pinaster - INRA_composite_2012 - LG3 F51TW9001CCHJH SNP 21.82 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 F51TW9001CCHJH SNP 26.19 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG3 F51TW9001CCHJH SNP 21.78 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG3 F51TW9001CCHJH SNP 32.93 (cM) Automated name-based View Maps
BX252454 SNP 16.31 Pinus pinaster - INRA_composite_2012 - LG3 BX252454 SNP 21.82 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 BX252454 SNP 26.19 (cM) Automated name-based View Maps
384_CesA7 SNP 23.81 Pinus pinaster - INIA_INRA2012 - LG3 384_CesA7 SNP 35.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 384_CesA7 SNP 29.33 (cM) Automated name-based View Maps
384_CesA3 SNP 23.81 Pinus pinaster - INIA_composite_2012 - LG3 384_CesA3 SNP 36.45 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 384_CesA3 SNP 35.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 384_CesA3 SNP 29.33 (cM) Automated name-based View Maps
CT575007 SNP 23.81 Pinus pinaster - INIA_INRA2012 - LG3 CT575007 SNP 35.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 CT575007 SNP 29.33 (cM) Automated name-based View Maps
F51TW9002HR3NX SNP 27.44 Pinus pinaster - INRA_composite_2012 - LG3 F51TW9002HR3NX SNP 29.36 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG3 F51TW9002HR3NX SNP 29.27 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 F51TW9002HR3NX SNP 35.03 (cM) Automated name-based View Maps
m955 SNP 31.00 Pinus pinaster - INRA_composite_2012 - LG3 m955 SNP 36.52 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 m955 SNP 45.36 (cM) Automated name-based View Maps
AL749601 SNP 31.14 Pinus pinaster - INRA_composite_2012 - LG3 AL749601 SNP 36.66 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 AL749601 SNP 45.36 (cM) Automated name-based View Maps
F51TW9001AFEDC SNP 34.72 Pinus pinaster - F2_H12_2012 - LG3 F51TW9001AFEDC SNP 35.61 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 F51TW9001AFEDC SNP 45.36 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 F51TW9001AFEDC SNP 36.66 (cM) Automated name-based View Maps
m696 SNP 36.14 Pinus pinaster - INRA_composite_2012 - LG3 m696 SNP 41.66 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 m696 SNP 45.36 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG3 m696 SNP 47.02 (cM) Automated name-based View Maps
F51TW9001BQ4PK SNP 45.18 Pinus pinaster - F2_H12_2012 - LG3 F51TW9001BQ4PK SNP 48.98 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 F51TW9001BQ4PK SNP 46.32 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 F51TW9001BQ4PK SNP 53.59 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG3 F51TW9001BQ4PK SNP 55.59 (cM) Automated name-based View Maps
CT577986 SNP 47.60 Pinus pinaster - INIA_INRA2012 - LG3 CT577986 SNP 60.39 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG3 CT577986 SNP 55.79 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 CT577986 SNP 53.12 (cM) Automated name-based View Maps
m1339 SNP 57.06 Pinus pinaster - INIA_INRA2012 - LG3 m1339 SNP 70.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 m1339 SNP 62.58 (cM) Automated name-based View Maps
AL749770 SNP 57.17 Pinus pinaster - INRA_composite_2012 - LG3 AL749770 SNP 62.69 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 AL749770 SNP 70.11 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG3 AL749770 SNP 65.29 (cM) Automated name-based View Maps
AL751211 SNP 57.17 Pinus pinaster - INRA_composite_2012 - LG3 AL751211 SNP 62.69 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG3 AL751211 SNP 67.40 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 AL751211 SNP 70.11 (cM) Automated name-based View Maps
BX666000 SNP 57.19 Pinus pinaster - INRA_composite_2012 - LG3 BX666000 SNP 62.71 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 BX666000 SNP 70.11 (cM) Automated name-based View Maps
estPtNCS_22B8 EST 57.27 Pinus pinaster - INRA_composite_2012 - LG3 estPtNCS_22B8 EST 63.22 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 estPtNCS_22B8 EST 68.58 (cM) Automated name-based View Maps
m952 SNP 58.95 Pinus pinaster - INRA_composite_2012 - LG3 m952 SNP 64.90 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 m952 SNP 71.01 (cM) Automated name-based View Maps
F51TW9001AOSW6 SNP 61.97 Pinus pinaster - INRA_composite_2012 - LG3 F51TW9001AOSW6 SNP 67.92 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG3 F51TW9001AOSW6 SNP 74.80 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 F51TW9001AOSW6 SNP 74.03 (cM) Automated name-based View Maps
F51TW9001B3UPH SNP 61.97 Pinus pinaster - INIA_INRA2012 - LG3 F51TW9001B3UPH SNP 74.03 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG3 F51TW9001B3UPH SNP 68.68 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 F51TW9001B3UPH SNP 67.92 (cM) Automated name-based View Maps
F51TW9001AJDAL SNP 61.97 Pinus pinaster - F2_H12_2012 - LG3 F51TW9001AJDAL SNP 77.75 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 F51TW9001AJDAL SNP 75.64 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 F51TW9001AJDAL SNP 69.53 (cM) Automated name-based View Maps
BX254969 SNP 61.97 Pinus pinaster - G2_G2M_2012 - LG3M BX254969 SNP 68.89 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG3 BX254969 SNP 70.60 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 BX254969 SNP 74.03 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG3 BX254969 SNP 73.91 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 BX254969 SNP 67.92 (cM) Automated name-based View Maps

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