CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-G2_G2F_2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG4F
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
eSSR
EST
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - G2_G2F_2012 [ View Map Set Info ]
Map Name: LG4F
Map Start: 0.00 cM
Map Stop: 104.70 cM
Features by Type:
1 EST
74 SNP
1 eSSR
76 Total

Map Features

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Items 1 to 25 of 76.       of 4 | Next
Pinus pinaster - G2_G2F_2012 - LG4F
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
F51TW9001AW1KL SNP 0.00 Pinus pinaster - INIA_composite_2012 - LG4 F51TW9001AW1KL SNP 4.34 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG4 F51TW9001AW1KL SNP 3.34 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG4 F51TW9001AW1KL SNP 3.34 (cM) Automated name-based View Maps
BX249896 SNP 2.46 Pinus pinaster - INRA_composite_2012 - LG4 BX249896 SNP 4.41 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG4 BX249896 SNP 8.35 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG4 BX249896 SNP 5.83 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG4 BX249896 SNP 0.00 (cM) Automated name-based View Maps
F51TW9001B9EGC SNP 2.46 Pinus pinaster - INIA_INRA2012 - LG4 F51TW9001B9EGC SNP 7.35 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG4 F51TW9001B9EGC SNP 5.80 (cM) Automated name-based View Maps
F51TW9001AZG2W SNP 2.46 Pinus pinaster - INIA_INRA2012 - LG4 F51TW9001AZG2W SNP 7.35 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG4 F51TW9001AZG2W SNP 5.80 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG4 F51TW9001AZG2W SNP 8.35 (cM) Automated name-based View Maps
BX682737 SNP 2.46 Pinus pinaster - INRA_composite_2012 - LG4 BX682737 SNP 5.80 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG4 BX682737 SNP 7.35 (cM) Automated name-based View Maps
F51TW9001AUIZJ SNP 2.46 Pinus pinaster - INIA_INRA2012 - LG4 F51TW9001AUIZJ SNP 7.35 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG4 F51TW9001AUIZJ SNP 5.80 (cM) Automated name-based View Maps
m668 SNP 2.72 Pinus pinaster - INIA_INRA2012 - LG4 m668 SNP 7.35 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG4 m668 SNP 6.06 (cM) Automated name-based View Maps
m667 SNP 3.54 Pinus pinaster - INIA_composite_2012 - LG4 m667 SNP 11.74 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG4 m667 SNP 7.66 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG4 m667 SNP 6.88 (cM) Automated name-based View Maps
F51TW9001BWATP SNP 6.00 Pinus pinaster - INRA_composite_2012 - LG4 F51TW9001BWATP SNP 9.34 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG4 F51TW9001BWATP SNP 11.74 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG4 F51TW9001BWATP SNP 8.69 (cM) Automated name-based View Maps
BX678027 SNP 27.99 Pinus pinaster - F2_H12_2012 - LG4 BX678027 SNP 43.41 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG4 BX678027 SNP 41.63 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG4 BX678027 SNP 23.10 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG4 BX678027 SNP 23.32 (cM) Automated name-based View Maps
F51TW9001CHA9W SNP 32.78 Pinus pinaster - INIA_INRA2012 - LG4 F51TW9001CHA9W SNP 25.27 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG4 F51TW9001CHA9W SNP 37.06 (cM) Automated name-based View Maps
BX678314 SNP 34.79 Pinus pinaster - INIA_composite_2012 - LG4 BX678314 SNP 28.38 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG4 BX678314 SNP 27.15 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG4 BX678314 SNP 39.07 (cM) Automated name-based View Maps
CT576698 SNP 34.93 Pinus pinaster - F2_H12_2012 - LG4 CT576698 SNP 40.82 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG4 CT576698 SNP 27.38 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG4 CT576698 SNP 41.63 (cM) Automated name-based View Maps
ssr_NZPR1724 eSSR 37.03 Pinus pinaster - INIA_INRA2012 - LG4 ssr_NZPR1724 eSSR 27.38 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG4M ssr_NZPR1724 eSSR 51.72 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG4 ssr_NZPR1724 eSSR 41.63 (cM) Automated name-based View Maps
BX253954 SNP 37.35 Pinus pinaster - INIA_INRA2012 - LG4 BX253954 SNP 27.38 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG4 BX253954 SNP 39.74 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG4 BX253954 SNP 32.18 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG4 BX253954 SNP 41.63 (cM) Automated name-based View Maps
F51TW9001BVD7X SNP 37.35 Pinus pinaster - INIA_composite_2012 - LG4 F51TW9001BVD7X SNP 36.42 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG4 F51TW9001BVD7X SNP 27.38 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG4 F51TW9001BVD7X SNP 41.63 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG4 F51TW9001BVD7X SNP 39.74 (cM) Automated name-based View Maps
CT574661 SNP 37.35 Pinus pinaster - INRA_composite_2012 - LG4 CT574661 SNP 41.63 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG4 CT574661 SNP 36.42 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG4 CT574661 SNP 27.38 (cM) Automated name-based View Maps
BX681399 SNP 37.35 Pinus pinaster - INIA_composite_2012 - LG4 BX681399 SNP 39.36 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG4 BX681399 SNP 27.38 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG4 BX681399 SNP 36.74 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG4 BX681399 SNP 41.63 (cM) Automated name-based View Maps
BX678369 SNP 37.35 Pinus pinaster - INRA_composite_2012 - LG4 BX678369 SNP 41.63 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG4 BX678369 SNP 27.38 (cM) Automated name-based View Maps
BX250913 SNP 37.35 Pinus pinaster - INRA_composite_2012 - LG4 BX250913 SNP 41.63 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG4 BX250913 SNP 27.38 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG4 BX250913 SNP 34.93 (cM) Automated name-based View Maps
BX682788 SNP 37.35 Pinus pinaster - F2_H12_2012 - LG4 BX682788 SNP 39.74 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG4 BX682788 SNP 41.63 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG4 BX682788 SNP 27.38 (cM) Automated name-based View Maps
F51TW9001A0SJD SNP 37.35 Pinus pinaster - INRA_composite_2012 - LG4 F51TW9001A0SJD SNP 41.63 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG4 F51TW9001A0SJD SNP 27.38 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG4 F51TW9001A0SJD SNP 37.98 (cM) Automated name-based View Maps
BX254227 SNP 49.68 Pinus pinaster - INIA_composite_2012 - LG4 BX254227 SNP 49.98 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG4 BX254227 SNP 53.96 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG4 BX254227 SNP 38.00 (cM) Automated name-based View Maps
BX250762 SNP 61.10 Pinus pinaster - F2_H12_2012 - LG4 BX250762 SNP 63.42 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG4 BX250762 SNP 53.20 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG4 BX250762 SNP 65.38 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG4 BX250762 SNP 69.07 (cM) Automated name-based View Maps
F51TW9001B0JRL SNP 63.59 Pinus pinaster - INIA_INRA2012 - LG4 F51TW9001B0JRL SNP 56.75 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG4 F51TW9001B0JRL SNP 67.87 (cM) Automated name-based View Maps

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