CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-INRA_composite_2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG6
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
eSSR
EST
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - INRA_composite_2012 [ View Map Set Info ]
Map Name: LG6
Map Start: 0.00 cM
Map Stop: 125.48 cM
Features by Type:
6 EST
156 SNP
1 eSSR
163 Total

Map Features

Restrict by Map:
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[ Download Feature Correspondence Data ]
Items 1 to 25 of 163.       of 7 | Next
Pinus pinaster - INRA_composite_2012 - LG6
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
F51TW9001A8BQ6 SNP 0.00 Pinus pinaster - F2_H12_2012 - LG6 F51TW9001A8BQ6 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 F51TW9001A8BQ6 SNP 1.45 (cM) Automated name-based View Maps
BX679017 SNP 0.00 Pinus pinaster - INIA_composite_2012 - LG6 BX679017 SNP 9.29 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 BX679017 SNP 1.45 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG6 BX679017 SNP 0.00 (cM) Automated name-based View Maps
F51TW9002FN4GR SNP 0.67 Pinus pinaster - F2_H12_2012 - LG6 F51TW9002FN4GR SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 F51TW9002FN4GR SNP 1.46 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG6M F51TW9002FN4GR SNP 1.12 (cM) Automated name-based View Maps
F51TW9001AV518 SNP 0.67 Pinus pinaster - INIA_composite_2012 - LG6 F51TW9001AV518 SNP 12.99 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG6 F51TW9001AV518 SNP 0.67 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG6M F51TW9001AV518 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 F51TW9001AV518 SNP 1.46 (cM) Automated name-based View Maps
AL750161 SNP 0.67 Pinus pinaster - G2_G2M_2012 - LG6M AL750161 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 AL750161 SNP 1.46 (cM) Automated name-based View Maps
F51TW9001BEZX4 SNP 0.67 Pinus pinaster - INIA_INRA2012 - LG6 F51TW9001BEZX4 SNP 1.50 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG6M F51TW9001BEZX4 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG6 F51TW9001BEZX4 SNP 15.75 (cM) Automated name-based View Maps
m333 SNP 0.67 Pinus pinaster - INIA_INRA2012 - LG6 m333 SNP 1.46 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG6M m333 SNP 0.69 (cM) Automated name-based View Maps
BX252510 SNP 0.67 Pinus pinaster - INIA_composite_2012 - LG6 BX252510 SNP 9.29 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG6M BX252510 SNP 1.12 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 BX252510 SNP 1.45 (cM) Automated name-based View Maps
CT578910 SNP 0.67 Pinus pinaster - INIA_INRA2012 - LG6 CT578910 SNP 1.46 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG6M CT578910 SNP 1.12 (cM) Automated name-based View Maps
BX681024 SNP 1.92 Pinus pinaster - INIA_INRA2012 - LG6 BX681024 SNP 10.71 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG6 BX681024 SNP 18.55 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG6M BX681024 SNP 2.37 (cM) Automated name-based View Maps
F51TW9001A46L3 SNP 1.92 Pinus pinaster - INIA_INRA2012 - LG6 F51TW9001A46L3 SNP 10.71 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG6M F51TW9001A46L3 SNP 2.37 (cM) Automated name-based View Maps
BX252256 SNP 2.78 Pinus pinaster - G2_G2F_2012 - LG6F BX252256 SNP 0.37 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 BX252256 SNP 10.71 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG6 BX252256 SNP 2.11 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG6 BX252256 SNP 17.31 (cM) Automated name-based View Maps
estPtIFG_606 EST 2.78 Pinus pinaster - INIA_INRA2012 - LG6 estPtIFG_606 EST 10.71 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG6F estPtIFG_606 EST 0.00 (cM) Automated name-based View Maps
BX252910 SNP 5.84 Pinus pinaster - G2_G2F_2012 - LG6F BX252910 SNP 1.58 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 BX252910 SNP 10.77 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG6 BX252910 SNP 18.61 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG6 BX252910 SNP 5.84 (cM) Automated name-based View Maps
SNPnew6 SNP 5.84 Pinus pinaster - F2_H12_2012 - LG6 SNPnew6 SNP 6.92 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 SNPnew6 SNP 10.77 (cM) Automated name-based View Maps
SNPnew48 SNP 5.84 Pinus pinaster - F2_H12_2012 - LG6 SNPnew48 SNP 6.93 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 SNPnew48 SNP 10.77 (cM) Automated name-based View Maps
BX254543 SNP 7.13 Pinus pinaster - G2_G2F_2012 - LG6F BX254543 SNP 2.76 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 BX254543 SNP 12.06 (cM) Automated name-based View Maps
FN695696 SNP 7.21 Pinus pinaster - G2_G2F_2012 - LG6F FN695696 SNP 2.84 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 FN695696 SNP 12.24 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG6 FN695696 SNP 18.68 (cM) Automated name-based View Maps
m153 SNP 8.31 Pinus pinaster - F2_H12_2012 - LG6 m153 SNP 10.08 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 m153 SNP 13.34 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG6F m153 SNP 3.94 (cM) Automated name-based View Maps
CT578882 SNP 8.40 Pinus pinaster - INIA_composite_2012 - LG6 CT578882 SNP 17.58 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 CT578882 SNP 20.17 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG6 CT578882 SNP 10.19 (cM) Automated name-based View Maps
384_CCoAomt1 SNP 8.40 Pinus pinaster - F2_H12_2012 - LG6 384_CCoAomt1 SNP 10.19 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 384_CCoAomt1 SNP 18.67 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG6 384_CCoAomt1 SNP 16.08 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG6F 384_CCoAomt1 SNP 4.03 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG6M 384_CCoAomt1 SNP 11.13 (cM) Automated name-based View Maps
SNPnew52 SNP 8.40 Pinus pinaster - F2_H12_2012 - LG6 SNPnew52 SNP 10.48 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 SNPnew52 SNP 18.67 (cM) Automated name-based View Maps
F51TW9001AQF5F SNP 8.40 Pinus pinaster - G2_G2F_2012 - LG6F F51TW9001AQF5F SNP 4.03 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG6 F51TW9001AQF5F SNP 10.64 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 F51TW9001AQF5F SNP 18.67 (cM) Automated name-based View Maps
CT575910 SNP 8.40 Pinus pinaster - F2_H12_2012 - LG6 CT575910 SNP 10.64 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 CT575910 SNP 20.17 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG6M CT575910 SNP 9.93 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG6 CT575910 SNP 27.77 (cM) Automated name-based View Maps
CR393643 SNP 8.40 Pinus pinaster - INIA_composite_2012 - LG6 CR393643 SNP 16.03 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 CR393643 SNP 18.62 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG6F CR393643 SNP 2.67 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG6 CR393643 SNP 10.78 (cM) Automated name-based View Maps

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