CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-G2_G2F_2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG5F
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
eSSR
EST
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - G2_G2F_2012 [ View Map Set Info ]
Map Name: LG5F
Map Start: 0.00 cM
Map Stop: 136.21 cM
Features by Type:
4 EST
63 SNP
2 eSSR
69 Total

Map Features

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Items 1 to 25 of 69.       of 3 | Next
Pinus pinaster - G2_G2F_2012 - LG5F
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
F51TW9001BR2I6 SNP 0.00 Pinus pinaster - F2_H12_2012 - LG5 F51TW9001BR2I6 SNP 0.77 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 F51TW9001BR2I6 SNP 3.28 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 F51TW9001BR2I6 SNP 0.77 (cM) Automated name-based View Maps
m19 SNP 1.25 Pinus pinaster - INIA_INRA2012 - LG5 m19 SNP 4.15 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 m19 SNP 1.64 (cM) Automated name-based View Maps
CT578526 SNP 11.40 Pinus pinaster - INIA_INRA2012 - LG5 CT578526 SNP 19.37 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG5 CT578526 SNP 14.35 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 CT578526 SNP 13.75 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG5 CT578526 SNP 29.93 (cM) Automated name-based View Maps
F51TW9001B7T52 SNP 16.33 Pinus pinaster - INIA_INRA2012 - LG5 F51TW9001B7T52 SNP 19.37 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG5 F51TW9001B7T52 SNP 17.46 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 F51TW9001B7T52 SNP 16.86 (cM) Automated name-based View Maps
estPtNCS_PtaAGP6 EST 18.04 Pinus pinaster - INRA_composite_2012 - LG5 estPtNCS_PtaAGP6 EST 23.28 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 estPtNCS_PtaAGP6 EST 25.79 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG5M estPtNCS_PtaAGP6 EST 10.93 (cM) Automated name-based View Maps
m658 SNP 22.73 Pinus pinaster - INIA_INRA2012 - LG5 m658 SNP 25.79 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 m658 SNP 23.28 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG5 m658 SNP 24.75 (cM) Automated name-based View Maps
BX680344 SNP 22.74 Pinus pinaster - INIA_INRA2012 - LG5 BX680344 SNP 25.79 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG5 BX680344 SNP 25.43 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 BX680344 SNP 23.28 (cM) Automated name-based View Maps
F51TW9001BV0Q9 SNP 40.18 Pinus pinaster - INIA_composite_2012 - LG5 F51TW9001BV0Q9 SNP 53.44 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 F51TW9001BV0Q9 SNP 25.79 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 F51TW9001BV0Q9 SNP 23.28 (cM) Automated name-based View Maps
F51TW9001CFMF0 SNP 46.20 Pinus pinaster - INIA_INRA2012 - LG5 F51TW9001CFMF0 SNP 27.64 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 F51TW9001CFMF0 SNP 28.66 (cM) Automated name-based View Maps
FN256887 SNP 46.20 Pinus pinaster - INIA_composite_2012 - LG5 FN256887 SNP 60.33 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 FN256887 SNP 32.95 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 FN256887 SNP 28.66 (cM) Automated name-based View Maps
ssr_RPtEST11 eSSR 49.35 Pinus pinaster - INRA_composite_2012 - LG5 ssr_RPtEST11 eSSR 28.66 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 ssr_RPtEST11 eSSR 27.64 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG5M ssr_RPtEST11 eSSR 7.96 (cM) Automated name-based View Maps
BX249015 SNP 59.88 Pinus pinaster - INIA_INRA2012 - LG5 BX249015 SNP 53.56 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG5 BX249015 SNP 58.48 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 BX249015 SNP 47.56 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG5 BX249015 SNP 74.20 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 BX249015 SNP 5.85 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG8 BX249015 SNP 13.80 (cM) Automated name-based View Maps
FN256668 SNP 62.29 Pinus pinaster - F2_H12_2012 - LG5 FN256668 SNP 68.39 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 FN256668 SNP 57.47 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 FN256668 SNP 57.96 (cM) Automated name-based View Maps
F51TW9001DBXSZ SNP 62.29 Pinus pinaster - INRA_composite_2012 - LG5 F51TW9001DBXSZ SNP 57.47 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 F51TW9001DBXSZ SNP 57.96 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG5 F51TW9001DBXSZ SNP 68.39 (cM) Automated name-based View Maps
BX254280 SNP 66.09 Pinus pinaster - INIA_INRA2012 - LG5 BX254280 SNP 61.76 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG5 BX254280 SNP 71.60 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 BX254280 SNP 61.27 (cM) Automated name-based View Maps
CT574697 SNP 75.09 Pinus pinaster - INRA_composite_2012 - LG5 CT574697 SNP 70.26 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 CT574697 SNP 70.75 (cM) Automated name-based View Maps
ssr_NZPR823 eSSR 78.38 Pinus pinaster - INIA_INRA2012 - LG5 ssr_NZPR823 eSSR 75.27 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 ssr_NZPR823 eSSR 73.56 (cM) Automated name-based View Maps
CT576796 SNP 78.74 Pinus pinaster - INIA_INRA2012 - LG5 CT576796 SNP 78.49 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG5 CT576796 SNP 91.39 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 CT576796 SNP 73.92 (cM) Automated name-based View Maps
AL751280 SNP 78.74 Pinus pinaster - INRA_composite_2012 - LG5 AL751280 SNP 73.92 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 AL751280 SNP 78.49 (cM) Automated name-based View Maps
CT577328 SNP 85.11 Pinus pinaster - INIA_composite_2012 - LG5 CT577328 SNP 97.29 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 CT577328 SNP 80.28 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 CT577328 SNP 89.12 (cM) Automated name-based View Maps
estPtMTU_PtCW1 EST 85.90 Pinus pinaster - INIA_INRA2012 - LG5 estPtMTU_PtCW1 EST 89.92 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 estPtMTU_PtCW1 EST 81.08 (cM) Automated name-based View Maps
F51TW9001AYUHT SNP 89.86 Pinus pinaster - INIA_composite_2012 - LG5 F51TW9001AYUHT SNP 103.48 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 F51TW9001AYUHT SNP 95.12 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 F51TW9001AYUHT SNP 85.04 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG5 F51TW9001AYUHT SNP 92.57 (cM) Automated name-based View Maps
CT583534 SNP 100.32 Pinus pinaster - INIA_INRA2012 - LG5 CT583534 SNP 112.73 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 CT583534 SNP 99.39 (cM) Automated name-based View Maps
F51TW9001BQ0U8 SNP 102.85 Pinus pinaster - INIA_INRA2012 - LG5 F51TW9001BQ0U8 SNP 113.46 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG5 F51TW9001BQ0U8 SNP 105.67 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 F51TW9001BQ0U8 SNP 101.92 (cM) Automated name-based View Maps
F51TW9001A5SUZ SNP 124.19 Pinus pinaster - INIA_INRA2012 - LG5 F51TW9001A5SUZ SNP 135.64 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG5 F51TW9001A5SUZ SNP 132.20 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG5 F51TW9001A5SUZ SNP 141.53 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 F51TW9001A5SUZ SNP 123.26 (cM) Automated name-based View Maps

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