CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-INIA_composite_2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG1
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
eSSR
SAMPL
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - INIA_composite_2012 [ View Map Set Info ]
Map Name: LG1
Map Start: 0.00 cM
Map Stop: 138.89 cM
Features by Type:
142 SNP
1 eSSR
21 SAMPL
164 Total

Map Features

Restrict by Map:
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[ Download Feature Correspondence Data ]
Items 1 to 25 of 164.       of 7 | Next
Pinus pinaster - INIA_composite_2012 - LG1
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
F51TW9001A34NZ SNP 0.00 Pinus pinaster - G2_G2F_2012 - LG1F F51TW9001A34NZ SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 F51TW9001A34NZ SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 F51TW9001A34NZ SNP 0.00 (cM) Automated name-based View Maps
m289 SNP 7.17 Pinus pinaster - G2_G2F_2012 - LG1F m289 SNP 3.44 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 m289 SNP 3.44 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG1 m289 SNP 0.20 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 m289 SNP 7.17 (cM) Automated name-based View Maps
i14266s112pg SNP 16.26 Pinus pinaster - INIA_INRA2012 - LG1 i14266s112pg SNP 9.07 (cM) Automated name-based View Maps
i14266s879pg SNP 16.72 Pinus pinaster - INIA_INRA2012 - LG1 i14266s879pg SNP 10.10 (cM) Automated name-based View Maps
BX251336 SNP 16.72 Pinus pinaster - INIA_INRA2012 - LG1 BX251336 SNP 10.10 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 BX251336 SNP 6.37 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG1F BX251336 SNP 5.93 (cM) Automated name-based View Maps
i04212s347pg SNP 16.83 Pinus pinaster - INIA_INRA2012 - LG1 i04212s347pg SNP 10.72 (cM) Automated name-based View Maps
BX249345 SNP 17.96 Pinus pinaster - INRA_composite_2012 - LG1 BX249345 SNP 6.37 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG1F BX249345 SNP 5.93 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 BX249345 SNP 11.54 (cM) Automated name-based View Maps
CT578821 SNP 17.96 Pinus pinaster - G2_G2M_2012 - LG1M CT578821 SNP 6.19 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 CT578821 SNP 6.73 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 CT578821 SNP 11.54 (cM) Automated name-based View Maps
BX255626 SNP 17.96 Pinus pinaster - G2_G2F_2012 - LG1F BX255626 SNP 9.62 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 BX255626 SNP 10.06 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG1 BX255626 SNP 12.17 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 BX255626 SNP 13.14 (cM) Automated name-based View Maps
AL749811 SNP 17.96 Pinus pinaster - INIA_INRA2012 - LG1 AL749811 SNP 14.59 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG1 AL749811 SNP 13.65 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 AL749811 SNP 11.54 (cM) Automated name-based View Maps
BX677950 SNP 17.96 Pinus pinaster - G2_G2M_2012 - LG1M BX677950 SNP 11.17 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 BX677950 SNP 14.76 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 BX677950 SNP 11.71 (cM) Automated name-based View Maps
m1181 SNP 18.17 Pinus pinaster - INIA_INRA2012 - LG1 m1181 SNP 15.58 (cM) Automated name-based View Maps
i14120s295pg SNP 19.33 Pinus pinaster - INIA_INRA2012 - LG1 i14120s295pg SNP 15.37 (cM) Automated name-based View Maps
i11063s568 SNP 23.56 Pinus pinaster - INIA_INRA2012 - LG1 i11063s568 SNP 18.70 (cM) Automated name-based View Maps
AL749719 SNP 24.30 Pinus pinaster - G2_G2M_2012 - LG1M AL749719 SNP 13.69 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 AL749719 SNP 19.44 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 AL749719 SNP 14.23 (cM) Automated name-based View Maps
T-CATA/E41_474 SAMPL 28.86 Pinus pinaster - INIA_INRA2012 - LG1 T-CATA/E41_474 SAMPL 27.06 (cM) Automated name-based View Maps
CT577655 SNP 29.62 Pinus pinaster - F2_H12_2012 - LG1 CT577655 SNP 21.70 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 CT577655 SNP 24.80 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 CT577655 SNP 19.59 (cM) Automated name-based View Maps
E44-GATA_164 SAMPL 29.98 Pinus pinaster - INIA_INRA2012 - LG1 E44-GATA_164 SAMPL 25.16 (cM) Automated name-based View Maps
i17893s327 SNP 30.68 Pinus pinaster - INIA_INRA2012 - LG1 i17893s327 SNP 13.86 (cM) Automated name-based View Maps
T-CATA/E42_348 SAMPL 31.10 Pinus pinaster - INIA_INRA2012 - LG1 T-CATA/E42_348 SAMPL 29.30 (cM) Automated name-based View Maps
T-CATA/E37_228 SAMPL 31.35 Pinus pinaster - INIA_INRA2012 - LG1 T-CATA/E37_228 SAMPL 32.19 (cM) Automated name-based View Maps
i10215s143 SNP 32.08 Pinus pinaster - INIA_INRA2012 - LG1 i10215s143 SNP 15.26 (cM) Automated name-based View Maps
T-CATA/E45_228 SAMPL 32.25 Pinus pinaster - INIA_INRA2012 - LG1 T-CATA/E45_228 SAMPL 32.19 (cM) Automated name-based View Maps
i09699s330pg SNP 33.33 Pinus pinaster - INIA_INRA2012 - LG1 i09699s330pg SNP 16.51 (cM) Automated name-based View Maps
i09699s1050pg SNP 33.92 Pinus pinaster - INIA_INRA2012 - LG1 i09699s1050pg SNP 17.10 (cM) Automated name-based View Maps

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