CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-INIA_composite_2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG3
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
EST
SAMPL
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - INIA_composite_2012 [ View Map Set Info ]
Map Name: LG3
Map Start: 0.00 cM
Map Stop: 139.86 cM
Features by Type:
1 EST
158 SNP
19 SAMPL
178 Total

Map Features

Restrict by Map:
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Items 1 to 25 of 178.       of 8 | Next
Pinus pinaster - INIA_composite_2012 - LG3
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
FN692520 SNP 0.00 Pinus pinaster - INIA_INRA2012 - LG3 FN692520 SNP 3.40 (cM) Automated name-based View Maps
FN694995 SNP 3.42 Pinus pinaster - G2_G2F_2012 - LG3F FN694995 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 FN694995 SNP 6.82 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 FN694995 SNP 5.52 (cM) Automated name-based View Maps
i09837s1458 SNP 8.11 Pinus pinaster - INIA_INRA2012 - LG3 i09837s1458 SNP 0.00 (cM) Automated name-based View Maps
BX250949 SNP 9.54 Pinus pinaster - F2_H12_2012 - LG3 BX250949 SNP 0.12 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG3M BX250949 SNP 0.59 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 BX250949 SNP 3.16 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 BX250949 SNP 1.87 (cM) Automated name-based View Maps
AL750773 SNP 9.55 Pinus pinaster - INIA_INRA2012 - LG3 AL750773 SNP 3.17 (cM) Automated name-based View Maps
FN695317 SNP 13.83 Pinus pinaster - INIA_INRA2012 - LG3 FN695317 SNP 7.46 (cM) Automated name-based View Maps
F51TW9001B2JOC SNP 16.15 Pinus pinaster - INIA_INRA2012 - LG3 F51TW9001B2JOC SNP 9.78 (cM) Automated name-based View Maps
i09722s1611 SNP 16.49 Pinus pinaster - INIA_INRA2012 - LG3 i09722s1611 SNP 8.39 (cM) Automated name-based View Maps
BX678275 SNP 18.06 Pinus pinaster - INIA_INRA2012 - LG3 BX678275 SNP 3.88 (cM) Automated name-based View Maps
i09722s630 SNP 19.00 Pinus pinaster - INIA_INRA2012 - LG3 i09722s630 SNP 4.20 (cM) Automated name-based View Maps
i12796s1057 SNP 19.68 Pinus pinaster - INIA_INRA2012 - LG3 i12796s1057 SNP 4.89 (cM) Automated name-based View Maps
i12796s109 SNP 19.69 Pinus pinaster - INIA_INRA2012 - LG3 i12796s109 SNP 4.89 (cM) Automated name-based View Maps
i10753s272pg SNP 19.69 Pinus pinaster - INIA_INRA2012 - LG3 i10753s272pg SNP 4.90 (cM) Automated name-based View Maps
i10753s860pg SNP 19.69 Pinus pinaster - INIA_INRA2012 - LG3 i10753s860pg SNP 4.98 (cM) Automated name-based View Maps
i11224s541pg SNP 19.69 Pinus pinaster - INIA_INRA2012 - LG3 i11224s541pg SNP 6.62 (cM) Automated name-based View Maps
CT576288 SNP 19.69 Pinus pinaster - INIA_INRA2012 - LG3 CT576288 SNP 12.42 (cM) Automated name-based View Maps
F51TW9002FZF2S SNP 20.90 Pinus pinaster - INIA_INRA2012 - LG3 F51TW9002FZF2S SNP 4.89 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG3 F51TW9002FZF2S SNP 1.78 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 F51TW9002FZF2S SNP 1.87 (cM) Automated name-based View Maps
F51TW9001BZVCF SNP 21.82 Pinus pinaster - INRA_composite_2012 - LG3 F51TW9001BZVCF SNP 10.19 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG3M F51TW9001BZVCF SNP 6.43 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 F51TW9001BZVCF SNP 11.49 (cM) Automated name-based View Maps
F51TW9001AUALQ SNP 23.32 Pinus pinaster - G2_G2F_2012 - LG3F F51TW9001AUALQ SNP 12.61 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 F51TW9001AUALQ SNP 18.13 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 F51TW9001AUALQ SNP 22.31 (cM) Automated name-based View Maps
BX254824 SNP 23.79 Pinus pinaster - INIA_INRA2012 - LG3 BX254824 SNP 16.73 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 BX254824 SNP 12.55 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG3M BX254824 SNP 8.79 (cM) Automated name-based View Maps
E44-CATA_276 SAMPL 23.79 Pinus pinaster - INIA_INRA2012 - LG3 E44-CATA_276 SAMPL 21.08 (cM) Automated name-based View Maps
m426 SNP 29.28 Pinus pinaster - INIA_INRA2012 - LG3 m426 SNP 23.07 (cM) Automated name-based View Maps
F51TW9001CCHJH SNP 32.93 Pinus pinaster - G2_G2F_2012 - LG3F F51TW9001CCHJH SNP 15.06 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 F51TW9001CCHJH SNP 26.19 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG3 F51TW9001CCHJH SNP 21.78 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 F51TW9001CCHJH SNP 21.82 (cM) Automated name-based View Maps
F51TW9001DAPOI SNP 33.83 Pinus pinaster - INIA_INRA2012 - LG3 F51TW9001DAPOI SNP 27.62 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG3 F51TW9001DAPOI SNP 23.20 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 F51TW9001DAPOI SNP 23.25 (cM) Automated name-based View Maps
i09896s1810pg SNP 33.86 Pinus pinaster - INIA_INRA2012 - LG3 i09896s1810pg SNP 28.93 (cM) Automated name-based View Maps

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