CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-G2_G2F_2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG6F
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
eSSR
EST
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - G2_G2F_2012 [ View Map Set Info ]
Map Name: LG6F
Map Start: 0.00 cM
Map Stop: 109.53 cM
Features by Type:
7 EST
92 SNP
1 eSSR
100 Total

Map Features

Restrict by Map:
[ Download Map Data ]
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Items 1 to 25 of 100.       of 4 | Next
Pinus pinaster - G2_G2F_2012 - LG6F
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
estPtIFG_606 EST 0.00 Pinus pinaster - INIA_INRA2012 - LG6 estPtIFG_606 EST 10.71 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 estPtIFG_606 EST 2.78 (cM) Automated name-based View Maps
BX252256 SNP 0.37 Pinus pinaster - INIA_composite_2012 - LG6 BX252256 SNP 17.31 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 BX252256 SNP 10.71 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 BX252256 SNP 2.78 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG6 BX252256 SNP 2.11 (cM) Automated name-based View Maps
BX252910 SNP 1.58 Pinus pinaster - INIA_INRA2012 - LG6 BX252910 SNP 10.77 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG6 BX252910 SNP 18.61 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 BX252910 SNP 5.84 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG6 BX252910 SNP 5.84 (cM) Automated name-based View Maps
CR393643 SNP 2.67 Pinus pinaster - F2_H12_2012 - LG6 CR393643 SNP 10.78 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 CR393643 SNP 8.40 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 CR393643 SNP 18.62 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG6 CR393643 SNP 16.03 (cM) Automated name-based View Maps
BX254543 SNP 2.76 Pinus pinaster - INIA_INRA2012 - LG6 BX254543 SNP 12.06 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 BX254543 SNP 7.13 (cM) Automated name-based View Maps
FN695696 SNP 2.84 Pinus pinaster - INIA_composite_2012 - LG6 FN695696 SNP 18.68 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 FN695696 SNP 12.24 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 FN695696 SNP 7.21 (cM) Automated name-based View Maps
m153 SNP 3.94 Pinus pinaster - F2_H12_2012 - LG6 m153 SNP 10.08 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 m153 SNP 8.31 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 m153 SNP 13.34 (cM) Automated name-based View Maps
384_CCoAomt1 SNP 4.03 Pinus pinaster - INIA_INRA2012 - LG6 384_CCoAomt1 SNP 18.67 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG6M 384_CCoAomt1 SNP 11.13 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG6 384_CCoAomt1 SNP 10.19 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG6 384_CCoAomt1 SNP 16.08 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 384_CCoAomt1 SNP 8.40 (cM) Automated name-based View Maps
BX249990 SNP 4.03 Pinus pinaster - INRA_composite_2012 - LG6 BX249990 SNP 8.40 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG6 BX249990 SNP 17.58 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 BX249990 SNP 20.17 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG6 BX249990 SNP 11.04 (cM) Automated name-based View Maps
F51TW9001AQF5F SNP 4.03 Pinus pinaster - F2_H12_2012 - LG6 F51TW9001AQF5F SNP 10.64 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 F51TW9001AQF5F SNP 18.67 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 F51TW9001AQF5F SNP 8.40 (cM) Automated name-based View Maps
m272 SNP 4.44 Pinus pinaster - F2_H12_2012 - LG6 m272 SNP 12.19 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 m272 SNP 20.17 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 m272 SNP 8.81 (cM) Automated name-based View Maps
BX249218 SNP 7.80 Pinus pinaster - INIA_INRA2012 - LG6 BX249218 SNP 18.67 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 BX249218 SNP 8.40 (cM) Automated name-based View Maps
ssrPp_cn524 eSSR 11.20 Pinus pinaster - INIA_INRA2012 - LG6 ssrPp_cn524 eSSR 18.67 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 ssrPp_cn524 eSSR 8.40 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG6M ssrPp_cn524 eSSR 8.85 (cM) Automated name-based View Maps
estPtIFG_8702 EST 13.35 Pinus pinaster - INIA_INRA2012 - LG6 estPtIFG_8702 EST 23.25 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 estPtIFG_8702 EST 15.59 (cM) Automated name-based View Maps
F51TW9001A99WW SNP 15.76 Pinus pinaster - INIA_composite_2012 - LG6 F51TW9001A99WW SNP 25.07 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 F51TW9001A99WW SNP 18.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 F51TW9001A99WW SNP 18.63 (cM) Automated name-based View Maps
m169 SNP 15.79 Pinus pinaster - INIA_INRA2012 - LG6 m169 SNP 18.63 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 m169 SNP 18.03 (cM) Automated name-based View Maps
CT578583 SNP 20.83 Pinus pinaster - INRA_composite_2012 - LG6 CT578583 SNP 23.07 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 CT578583 SNP 18.20 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG6 CT578583 SNP 26.45 (cM) Automated name-based View Maps
CT577899 SNP 23.20 Pinus pinaster - INRA_composite_2012 - LG6 CT577899 SNP 25.44 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 CT577899 SNP 20.57 (cM) Automated name-based View Maps
CT575388 SNP 23.20 Pinus pinaster - INRA_composite_2012 - LG6 CT575388 SNP 25.44 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 CT575388 SNP 20.57 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG6M CT575388 SNP 27.73 (cM) Automated name-based View Maps
CT581538 SNP 23.20 Pinus pinaster - INIA_INRA2012 - LG6 CT581538 SNP 26.84 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 CT581538 SNP 31.71 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG6 CT581538 SNP 35.09 (cM) Automated name-based View Maps
F51TW9001AM7NV SNP 23.20 Pinus pinaster - INIA_INRA2012 - LG6 F51TW9001AM7NV SNP 20.57 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 F51TW9001AM7NV SNP 25.44 (cM) Automated name-based View Maps
estPtIFG_9044 EST 23.45 Pinus pinaster - INIA_INRA2012 - LG6 estPtIFG_9044 EST 27.09 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 estPtIFG_9044 EST 31.96 (cM) Automated name-based View Maps
CR354655 SNP 24.41 Pinus pinaster - INIA_INRA2012 - LG6 CR354655 SNP 28.05 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 CR354655 SNP 32.92 (cM) Automated name-based View Maps
BX254295 SNP 24.53 Pinus pinaster - INIA_INRA2012 - LG6 BX254295 SNP 38.21 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG6 BX254295 SNP 50.01 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 BX254295 SNP 33.04 (cM) Automated name-based View Maps
m69 SNP 26.82 Pinus pinaster - F2_H12_2012 - LG6 m69 SNP 40.66 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 m69 SNP 38.21 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 m69 SNP 35.33 (cM) Automated name-based View Maps

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