CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-G2_G2F_2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG7F
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
EST
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - G2_G2F_2012 [ View Map Set Info ]
Map Name: LG7F
Map Start: 0.00 cM
Map Stop: 121.37 cM
Features by Type:
5 EST
70 SNP
75 Total

Map Features

Restrict by Map:
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Items 1 to 25 of 75.       of 3 | Next
Pinus pinaster - G2_G2F_2012 - LG7F
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
CT576711 SNP 0.00 Pinus pinaster - INIA_composite_2012 - LG7 CT576711 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG7 CT576711 SNP 1.63 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG7 CT576711 SNP 1.63 (cM) Automated name-based View Maps
FN695545 SNP 0.00 Pinus pinaster - F2_H12_2012 - LG7 FN695545 SNP 1.63 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG7 FN695545 SNP 7.83 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG7 FN695545 SNP 1.63 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG7 FN695545 SNP 4.24 (cM) Automated name-based View Maps
m531 SNP 1.73 Pinus pinaster - INRA_composite_2012 - LG7 m531 SNP 3.36 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG7 m531 SNP 4.08 (cM) Automated name-based View Maps
BX253196 SNP 4.92 Pinus pinaster - F2_H12_2012 - LG7 BX253196 SNP 8.47 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG7 BX253196 SNP 17.42 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG7 BX253196 SNP 8.47 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG7 BX253196 SNP 20.83 (cM) Automated name-based View Maps
F51TW9002JM1TL SNP 7.37 Pinus pinaster - INRA_composite_2012 - LG7 F51TW9002JM1TL SNP 10.92 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG7 F51TW9002JM1TL SNP 18.91 (cM) Automated name-based View Maps
F51TW9001AHIAO SNP 7.37 Pinus pinaster - INRA_composite_2012 - LG7 F51TW9001AHIAO SNP 10.92 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG7 F51TW9001AHIAO SNP 24.27 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG7 F51TW9001AHIAO SNP 20.68 (cM) Automated name-based View Maps
F51TW9001AHJDG SNP 7.37 Pinus pinaster - INIA_INRA2012 - LG7 F51TW9001AHJDG SNP 21.22 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG7 F51TW9001AHJDG SNP 24.10 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG7 F51TW9001AHJDG SNP 10.92 (cM) Automated name-based View Maps
AL749949 SNP 26.74 Pinus pinaster - INIA_INRA2012 - LG7 AL749949 SNP 26.38 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG7 AL749949 SNP 24.78 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG7 AL749949 SNP 24.78 (cM) Automated name-based View Maps
estPtIFG_8436 EST 28.98 Pinus pinaster - INIA_INRA2012 - LG7 estPtIFG_8436 EST 31.78 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG7 estPtIFG_8436 EST 32.53 (cM) Automated name-based View Maps
estPsUF2_NIR EST 31.34 Pinus pinaster - INRA_composite_2012 - LG7 estPsUF2_NIR EST 34.89 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG7 estPsUF2_NIR EST 34.14 (cM) Automated name-based View Maps
F51TW9001C4TBD SNP 32.42 Pinus pinaster - INIA_INRA2012 - LG7 F51TW9001C4TBD SNP 35.22 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG7 F51TW9001C4TBD SNP 35.97 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG7 F51TW9001C4TBD SNP 42.68 (cM) Automated name-based View Maps
CT580178 SNP 33.65 Pinus pinaster - INIA_INRA2012 - LG7 CT580178 SNP 36.45 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG7 CT580178 SNP 37.20 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG7 CT580178 SNP 44.29 (cM) Automated name-based View Maps
AL750466 SNP 36.22 Pinus pinaster - INRA_composite_2012 - LG7 AL750466 SNP 43.05 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG7 AL750466 SNP 46.13 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG7 AL750466 SNP 41.69 (cM) Automated name-based View Maps
CT580245 SNP 41.05 Pinus pinaster - INIA_composite_2012 - LG7 CT580245 SNP 45.21 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG7 CT580245 SNP 45.40 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG7 CT580245 SNP 47.80 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG7 CT580245 SNP 42.33 (cM) Automated name-based View Maps
F51TW9001AFOC6 SNP 43.53 Pinus pinaster - INIA_INRA2012 - LG7 F51TW9001AFOC6 SNP 45.31 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG7 F51TW9001AFOC6 SNP 50.89 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG7 F51TW9001AFOC6 SNP 40.96 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG7 F51TW9001AFOC6 SNP 47.88 (cM) Automated name-based View Maps
F51TW9001BD1TJ SNP 53.00 Pinus pinaster - INIA_INRA2012 - LG7 F51TW9001BD1TJ SNP 48.75 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG7 F51TW9001BD1TJ SNP 54.63 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG7 F51TW9001BD1TJ SNP 56.05 (cM) Automated name-based View Maps
CT582880 SNP 54.33 Pinus pinaster - INIA_INRA2012 - LG7 CT582880 SNP 50.08 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG7 CT582880 SNP 55.96 (cM) Automated name-based View Maps
FN693007 SNP 68.08 Pinus pinaster - F2_H12_2012 - LG7 FN693007 SNP 72.70 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG7 FN693007 SNP 71.03 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG7 FN693007 SNP 66.37 (cM) Automated name-based View Maps
AL750779 SNP 68.08 Pinus pinaster - INIA_composite_2012 - LG5 AL750779 SNP 144.77 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG7 AL750779 SNP 65.05 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 AL750779 SNP 138.67 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG7 AL750779 SNP 69.71 (cM) Automated name-based View Maps
BX248819 SNP 71.86 Pinus pinaster - INIA_INRA2012 - LG7 BX248819 SNP 76.05 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG7 BX248819 SNP 89.33 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG7 BX248819 SNP 73.49 (cM) Automated name-based View Maps
m323 SNP 71.87 Pinus pinaster - INIA_INRA2012 - LG7 m323 SNP 66.37 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG7 m323 SNP 71.03 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG7 m323 SNP 72.11 (cM) Automated name-based View Maps
FN695953 SNP 72.02 Pinus pinaster - INRA_composite_2012 - LG7 FN695953 SNP 73.65 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG7 FN695953 SNP 76.05 (cM) Automated name-based View Maps
BX251000 SNP 72.02 Pinus pinaster - INIA_composite_2012 - LG7 BX251000 SNP 103.19 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG7 BX251000 SNP 73.65 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG7 BX251000 SNP 75.07 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG7 BX251000 SNP 86.20 (cM) Automated name-based View Maps
m509 SNP 72.04 Pinus pinaster - INIA_INRA2012 - LG7 m509 SNP 86.20 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG7 m509 SNP 73.67 (cM) Automated name-based View Maps
AL750940 SNP 73.17 Pinus pinaster - INIA_INRA2012 - LG7 AL750940 SNP 70.65 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG7 AL750940 SNP 76.99 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG7 AL750940 SNP 74.80 (cM) Automated name-based View Maps

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