CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-INIA_composite_2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG9
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
SAMPL
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - INIA_composite_2012 [ View Map Set Info ]
Map Name: LG9
Map Start: 0.00 cM
Map Stop: 135.26 cM
Features by Type:
170 SNP
7 SAMPL
177 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 177.       of 8 | Next
Pinus pinaster - INIA_composite_2012 - LG9
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
AL749800 SNP 0.00 Pinus pinaster - INRA_composite_2012 - LG9 AL749800 SNP 0.94 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG9 AL749800 SNP 0.94 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG9 AL749800 SNP 0.94 (cM) Automated name-based View Maps
CT575718 SNP 0.55 Pinus pinaster - G2_G2F_2012 - LG9F CT575718 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG9 CT575718 SNP 2.76 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG9 CT575718 SNP 4.88 (cM) Automated name-based View Maps
i10920s267pg SNP 1.42 Pinus pinaster - INIA_INRA2012 - LG9 i10920s267pg SNP 1.45 (cM) Automated name-based View Maps
i10920s1476pg SNP 1.61 Pinus pinaster - INIA_INRA2012 - LG9 i10920s1476pg SNP 1.64 (cM) Automated name-based View Maps
BX677050 SNP 1.90 Pinus pinaster - INIA_INRA2012 - LG9 BX677050 SNP 2.84 (cM) Automated name-based View Maps
BX252611 SNP 2.47 Pinus pinaster - INRA_composite_2012 - LG9 BX252611 SNP 0.94 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG9 BX252611 SNP 2.50 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG9 BX252611 SNP 0.94 (cM) Automated name-based View Maps
CT574902 SNP 2.52 Pinus pinaster - F2_H12_2012 - LG9 CT574902 SNP 0.94 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG9 CT574902 SNP 0.94 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG9 CT574902 SNP 2.50 (cM) Automated name-based View Maps
CT578579 SNP 2.52 Pinus pinaster - INRA_composite_2012 - LG9 CT578579 SNP 1.75 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG9F CT578579 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG9 CT578579 SNP 3.56 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG9 CT578579 SNP 0.94 (cM) Automated name-based View Maps
AL750449 SNP 2.52 Pinus pinaster - INIA_INRA2012 - LG9 AL750449 SNP 3.46 (cM) Automated name-based View Maps
i11960s881 SNP 2.52 Pinus pinaster - INIA_INRA2012 - LG9 i11960s881 SNP 2.50 (cM) Automated name-based View Maps
CT576158 SNP 2.69 Pinus pinaster - INIA_INRA2012 - LG9 CT576158 SNP 3.63 (cM) Automated name-based View Maps
BX255474 SNP 4.07 Pinus pinaster - F2_H12_2012 - LG9 BX255474 SNP 1.75 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG9 BX255474 SNP 1.75 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG9 BX255474 SNP 4.88 (cM) Automated name-based View Maps
F51TW9001CC8PS SNP 4.29 Pinus pinaster - INIA_INRA2012 - LG9 F51TW9001CC8PS SNP 5.23 (cM) Automated name-based View Maps
BX249461 SNP 4.40 Pinus pinaster - G2_G2M_2012 - LG9M BX249461 SNP 1.24 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG9 BX249461 SNP 1.75 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG9 BX249461 SNP 3.49 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG9 BX249461 SNP 5.34 (cM) Automated name-based View Maps
i10624s398 SNP 5.35 Pinus pinaster - INIA_INRA2012 - LG9 i10624s398 SNP 5.34 (cM) Automated name-based View Maps
i10624s225 SNP 5.57 Pinus pinaster - INIA_INRA2012 - LG9 i10624s225 SNP 3.78 (cM) Automated name-based View Maps
FN694440 SNP 6.49 Pinus pinaster - F2_H12_2012 - LG9 FN694440 SNP 6.63 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG9 FN694440 SNP 7.43 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG9 FN694440 SNP 8.37 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG9F FN694440 SNP 6.08 (cM) Automated name-based View Maps
T-CATA/E32_388 SAMPL 8.38 Pinus pinaster - INIA_INRA2012 - LG9 T-CATA/E32_388 SAMPL 6.60 (cM) Automated name-based View Maps
i15665s21 SNP 8.70 Pinus pinaster - INIA_INRA2012 - LG9 i15665s21 SNP 6.92 (cM) Automated name-based View Maps
i16617s402 SNP 8.70 Pinus pinaster - INIA_INRA2012 - LG9 i16617s402 SNP 6.91 (cM) Automated name-based View Maps
i15665s171 SNP 8.72 Pinus pinaster - INIA_INRA2012 - LG9 i15665s171 SNP 6.93 (cM) Automated name-based View Maps
BX250210 SNP 9.22 Pinus pinaster - INIA_INRA2012 - LG9 BX250210 SNP 7.43 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG9 BX250210 SNP 9.71 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG9M BX250210 SNP 6.22 (cM) Automated name-based View Maps
AL749631 SNP 9.22 Pinus pinaster - INIA_INRA2012 - LG9 AL749631 SNP 7.43 (cM) Automated name-based View Maps
BX253305 SNP 9.22 Pinus pinaster - INIA_INRA2012 - LG9 BX253305 SNP 7.43 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG9F BX253305 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG9 BX253305 SNP 2.76 (cM) Automated name-based View Maps
i11937s1104 SNP 10.74 Pinus pinaster - INIA_INRA2012 - LG9 i11937s1104 SNP 8.95 (cM) Automated name-based View Maps

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