CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-INIA_composite_2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG10
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
EST
SAMPL
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - INIA_composite_2012 [ View Map Set Info ]
Map Name: LG10
Map Start: 0.00 cM
Map Stop: 144.45 cM
Features by Type:
1 EST
125 SNP
20 SAMPL
146 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 146.       of 6 | Next
Pinus pinaster - INIA_composite_2012 - LG10
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
BX679618 SNP 0.00 Pinus pinaster - INIA_INRA2012 - LG10 BX679618 SNP 0.95 (cM) Automated name-based View Maps
CT575880 SNP 0.00 Pinus pinaster - G2_G2F_2012 - LG10F CT575880 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG10 CT575880 SNP 0.95 (cM) Automated name-based View Maps
BX254530 SNP 1.98 Pinus pinaster - G2_G2F_2012 - LG10F BX254530 SNP 2.53 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG10 BX254530 SNP 3.90 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG10 BX254530 SNP 4.24 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG10 BX254530 SNP 4.24 (cM) Automated name-based View Maps
i11825s750pg SNP 3.29 Pinus pinaster - INIA_INRA2012 - LG10 i11825s750pg SNP 4.24 (cM) Automated name-based View Maps
m1004 SNP 4.63 Pinus pinaster - INIA_INRA2012 - LG10 m1004 SNP 6.89 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG10F m1004 SNP 6.83 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG10 m1004 SNP 12.73 (cM) Automated name-based View Maps
m1308 SNP 8.11 Pinus pinaster - INIA_INRA2012 - LG10 m1308 SNP 9.06 (cM) Automated name-based View Maps
T-CATA/E34_84 SAMPL 11.63 Pinus pinaster - INIA_INRA2012 - LG10 T-CATA/E34_84 SAMPL 9.36 (cM) Automated name-based View Maps
i14905s223pg SNP 11.72 Pinus pinaster - INIA_INRA2012 - LG10 i14905s223pg SNP 9.36 (cM) Automated name-based View Maps
i14905s402pg SNP 11.73 Pinus pinaster - INIA_INRA2012 - LG10 i14905s402pg SNP 9.37 (cM) Automated name-based View Maps
BX676885 SNP 11.76 Pinus pinaster - INRA_composite_2012 - LG10 BX676885 SNP 8.94 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG10M BX676885 SNP 8.80 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG10 BX676885 SNP 9.37 (cM) Automated name-based View Maps
m110 SNP 11.98 Pinus pinaster - INIA_INRA2012 - LG10 m110 SNP 9.62 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG10M m110 SNP 10.06 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG10 m110 SNP 10.20 (cM) Automated name-based View Maps
CT577731 SNP 11.98 Pinus pinaster - INIA_INRA2012 - LG10 CT577731 SNP 9.62 (cM) Automated name-based View Maps
m853 SNP 12.56 Pinus pinaster - F2_H12_2012 - LG10 m853 SNP 0.34 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG10 m853 SNP 0.34 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG10 m853 SNP 10.17 (cM) Automated name-based View Maps
FN256926 SNP 12.72 Pinus pinaster - F2_H12_2012 - LG10 FN256926 SNP 0.73 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG10 FN256926 SNP 10.33 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG10 FN256926 SNP 0.73 (cM) Automated name-based View Maps
BX677407 SNP 12.96 Pinus pinaster - INRA_composite_2012 - LG10 BX677407 SNP 16.01 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG10 BX677407 SNP 11.69 (cM) Automated name-based View Maps
BX784194 SNP 13.89 Pinus pinaster - INRA_composite_2012 - LG10 BX784194 SNP 12.62 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG10 BX784194 SNP 12.62 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG10M BX784194 SNP 12.48 (cM) Automated name-based View Maps
T-CATA/E37_133 SAMPL 14.65 Pinus pinaster - INIA_INRA2012 - LG10 T-CATA/E37_133 SAMPL 13.38 (cM) Automated name-based View Maps
T-GATA/E42_149 SAMPL 14.67 Pinus pinaster - INIA_INRA2012 - LG10 T-GATA/E42_149 SAMPL 13.40 (cM) Automated name-based View Maps
T-CATA/E44_104 SAMPL 15.57 Pinus pinaster - INIA_INRA2012 - LG10 T-CATA/E44_104 SAMPL 14.30 (cM) Automated name-based View Maps
T-CATA/E46_55 SAMPL 16.40 Pinus pinaster - INIA_INRA2012 - LG10 T-CATA/E46_55 SAMPL 15.13 (cM) Automated name-based View Maps
i10153s222 SNP 16.60 Pinus pinaster - INIA_INRA2012 - LG10 i10153s222 SNP 15.33 (cM) Automated name-based View Maps
CT583571 SNP 17.51 Pinus pinaster - INIA_INRA2012 - LG10 CT583571 SNP 16.24 (cM) Automated name-based View Maps
E44-GCATA_158 SAMPL 18.07 Pinus pinaster - INIA_INRA2012 - LG10 E44-GCATA_158 SAMPL 16.80 (cM) Automated name-based View Maps
BX250330 SNP 19.21 Pinus pinaster - INIA_INRA2012 - LG10 BX250330 SNP 17.94 (cM) Automated name-based View Maps
AL750473 SNP 19.21 Pinus pinaster - INIA_INRA2012 - LG10 AL750473 SNP 18.32 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG10M AL750473 SNP 25.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG10 AL750473 SNP 22.64 (cM) Automated name-based View Maps

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