CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-F2_H12_2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG3
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - F2_H12_2012 [ View Map Set Info ]
Map Name: LG3
Map Start: 0.00 cM
Map Stop: 162.55 cM
Features by Type:
122 SNP
122 Total

Map Features

Restrict by Map:
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Items 1 to 25 of 122.       of 5 | Next
Pinus pinaster - F2_H12_2012 - LG3
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
m298 SNP 0.00 Pinus pinaster - INIA_INRA2012 - LG3 m298 SNP 1.29 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 m298 SNP 0.00 (cM) Automated name-based View Maps
BX255567 SNP 0.12 Pinus pinaster - INRA_composite_2012 - LG3 BX255567 SNP 0.14 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG3F BX255567 (2/12) SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG3M BX255567 (0/12) SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 BX255567 SNP 1.43 (cM) Automated name-based View Maps
BX250949 SNP 0.12 Pinus pinaster - G2_G2M_2012 - LG3M BX250949 SNP 0.59 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 BX250949 SNP 1.87 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 BX250949 SNP 3.16 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG3 BX250949 SNP 9.54 (cM) Automated name-based View Maps
F51TW9002FZF2S SNP 1.78 Pinus pinaster - INIA_composite_2012 - LG3 F51TW9002FZF2S SNP 20.90 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 F51TW9002FZF2S SNP 4.89 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 F51TW9002FZF2S SNP 1.87 (cM) Automated name-based View Maps
SNPnew19 SNP 12.88 Pinus pinaster - INRA_composite_2012 - LG3 SNPnew19 SNP 12.93 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 SNPnew19 SNP 17.11 (cM) Automated name-based View Maps
BX252758 SNP 20.02 Pinus pinaster - INIA_INRA2012 - LG3 BX252758 SNP 24.49 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG3M BX252758 SNP 16.36 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 BX252758 SNP 20.12 (cM) Automated name-based View Maps
m421 SNP 20.46 Pinus pinaster - INIA_INRA2012 - LG3 m421 SNP 24.93 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 m421 SNP 20.56 (cM) Automated name-based View Maps
CT581274 SNP 20.77 Pinus pinaster - INRA_composite_2012 - LG3 CT581274 SNP 20.82 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 CT581274 SNP 25.19 (cM) Automated name-based View Maps
F51TW9001CCHJH SNP 21.78 Pinus pinaster - INRA_composite_2012 - LG3 F51TW9001CCHJH SNP 21.82 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 F51TW9001CCHJH SNP 26.19 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG3 F51TW9001CCHJH SNP 32.93 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG3F F51TW9001CCHJH SNP 15.06 (cM) Automated name-based View Maps
F51TW9001DAPOI SNP 23.20 Pinus pinaster - INIA_INRA2012 - LG3 F51TW9001DAPOI SNP 27.62 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 F51TW9001DAPOI SNP 23.25 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG3 F51TW9001DAPOI SNP 33.83 (cM) Automated name-based View Maps
AL749953 SNP 25.53 Pinus pinaster - INIA_INRA2012 - LG3 AL749953 SNP 29.97 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG3 AL749953 SNP 36.61 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 AL749953 SNP 25.60 (cM) Automated name-based View Maps
m70 SNP 25.85 Pinus pinaster - INRA_composite_2012 - LG3 m70 SNP 25.91 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 m70 SNP 30.28 (cM) Automated name-based View Maps
m640 SNP 25.96 Pinus pinaster - INRA_composite_2012 - LG3 m640 SNP 26.02 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG3 m640 SNP 38.02 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 m640 SNP 32.22 (cM) Automated name-based View Maps
BX678445 SNP 26.89 Pinus pinaster - G2_G2F_2012 - LG3F BX678445 (3/10) SNP 23.81 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 BX678445 SNP 26.95 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 BX678445 SNP 32.99 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG3M BX678445 (5/7) SNP 31.02 (cM) Automated name-based View Maps
F51TW9001EH69P SNP 26.89 Pinus pinaster - INIA_INRA2012 - LG3 F51TW9001EH69P SNP 32.99 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 F51TW9001EH69P SNP 26.95 (cM) Automated name-based View Maps
BX784131 SNP 29.27 Pinus pinaster - INIA_INRA2012 - LG3 BX784131 SNP 35.03 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 BX784131 SNP 29.36 (cM) Automated name-based View Maps
F51TW9001AY2NA SNP 29.27 Pinus pinaster - G2_G2F_2012 - LG3F F51TW9001AY2NA (0/13) SNP 27.44 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 F51TW9001AY2NA SNP 29.36 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG3 F51TW9001AY2NA SNP 36.69 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG3M F51TW9001AY2NA (2/11) SNP 16.36 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 F51TW9001AY2NA SNP 35.03 (cM) Automated name-based View Maps
F51TW9002HR3NX SNP 29.27 Pinus pinaster - G2_G2F_2012 - LG3F F51TW9002HR3NX SNP 27.44 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 F51TW9002HR3NX SNP 35.03 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 F51TW9002HR3NX SNP 29.36 (cM) Automated name-based View Maps
CT577982 SNP 30.72 Pinus pinaster - G2_G2M_2012 - LG3M CT577982 (0/14) SNP 33.52 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 CT577982 SNP 30.80 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 CT577982 SNP 37.26 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG3 CT577982 SNP 40.09 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG3F CT577982 (0/14.5) SNP 31.14 (cM) Automated name-based View Maps
BX249074 SNP 35.61 Pinus pinaster - G2_G2F_2012 - LG3F BX249074 (0/10) SNP 36.14 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 BX249074 SNP 35.75 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG3 BX249074 SNP 48.56 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG3M BX249074 (3/7) SNP 33.43 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 BX249074 SNP 45.36 (cM) Automated name-based View Maps
F51TW9001AFEDC SNP 35.61 Pinus pinaster - INRA_composite_2012 - LG3 F51TW9001AFEDC SNP 36.66 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 F51TW9001AFEDC SNP 45.36 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG3F F51TW9001AFEDC SNP 34.72 (cM) Automated name-based View Maps
SNPnew9 SNP 37.01 Pinus pinaster - INRA_composite_2012 - LG3 SNPnew9 SNP 36.66 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 SNPnew9 SNP 45.36 (cM) Automated name-based View Maps
BX682461 SNP 40.27 Pinus pinaster - INIA_INRA2012 - LG3 BX682461 SNP 45.36 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 BX682461 SNP 37.57 (cM) Automated name-based View Maps
F51TW9001AMHCH SNP 40.86 Pinus pinaster - G2_G2M_2012 - LG3M F51TW9001AMHCH SNP 33.52 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG3 F51TW9001AMHCH SNP 48.56 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 F51TW9001AMHCH SNP 38.16 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 F51TW9001AMHCH SNP 45.36 (cM) Automated name-based View Maps
m692 SNP 42.65 Pinus pinaster - G2_G2M_2012 - LG3M m692 SNP 33.43 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG3 m692 SNP 48.68 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 m692 SNP 45.36 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 m692 SNP 38.16 (cM) Automated name-based View Maps

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