CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-INIA_composite_2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG11
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
EST
SAMPL
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - INIA_composite_2012 [ View Map Set Info ]
Map Name: LG11
Map Start: 0.00 cM
Map Stop: 114.80 cM
Features by Type:
1 EST
136 SNP
10 SAMPL
147 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 147.       of 6 | Next
Pinus pinaster - INIA_composite_2012 - LG11
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
AL749873 SNP 24.16 Pinus pinaster - INRA_composite_2012 - LG11 AL749873 SNP 18.86 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG11F AL749873 SNP 16.27 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 AL749873 SNP 18.25 (cM) Automated name-based View Maps
BX681201 SNP 0.00 Pinus pinaster - INIA_INRA2012 - LG11 BX681201 SNP 0.00 (cM) Automated name-based View Maps
BX253174 SNP 3.42 Pinus pinaster - INRA_composite_2012 - LG11 BX253174 SNP 2.59 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG11M BX253174 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG11 BX253174 SNP 4.28 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 BX253174 SNP 5.24 (cM) Automated name-based View Maps
F51TW9001AGXEH SNP 6.94 Pinus pinaster - INIA_INRA2012 - LG11 F51TW9001AGXEH SNP 4.65 (cM) Automated name-based View Maps
F51TW9001BQP4G SNP 8.54 Pinus pinaster - INRA_composite_2012 - LG11 F51TW9001BQP4G SNP 5.05 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG11 F51TW9001BQP4G SNP 5.10 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 F51TW9001BQP4G SNP 5.24 (cM) Automated name-based View Maps
CR392669 SNP 8.69 Pinus pinaster - G2_G2F_2012 - LG11F CR392669 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 CR392669 SNP 2.59 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 CR392669 SNP 5.24 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG11M CR392669 SNP 3.68 (cM) Automated name-based View Maps
F51TW9001BIE15 SNP 8.72 Pinus pinaster - INIA_INRA2012 - LG11 F51TW9001BIE15 SNP 5.27 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 F51TW9001BIE15 SNP 5.27 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG11M F51TW9001BIE15 SNP 8.71 (cM) Automated name-based View Maps
BX677559 SNP 8.91 Pinus pinaster - INRA_composite_2012 - LG11 BX677559 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG11 BX677559 SNP 0.05 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 BX677559 SNP 5.24 (cM) Automated name-based View Maps
i11761s479 SNP 9.80 Pinus pinaster - INIA_INRA2012 - LG11 i11761s479 SNP 5.89 (cM) Automated name-based View Maps
BX682661 SNP 10.09 Pinus pinaster - INRA_composite_2012 - LG11 BX682661 SNP 2.59 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 BX682661 SNP 5.24 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG11 BX682661 SNP 2.64 (cM) Automated name-based View Maps
BX250094 SNP 10.77 Pinus pinaster - INIA_INRA2012 - LG11 BX250094 SNP 5.24 (cM) Automated name-based View Maps
i13688s697 SNP 11.04 Pinus pinaster - INIA_INRA2012 - LG11 i13688s697 SNP 6.98 (cM) Automated name-based View Maps
i13688s373 SNP 11.05 Pinus pinaster - INIA_INRA2012 - LG11 i13688s373 SNP 6.99 (cM) Automated name-based View Maps
BX678173 SNP 13.75 Pinus pinaster - INIA_INRA2012 - LG11 BX678173 SNP 2.25 (cM) Automated name-based View Maps
i13885s790pg SNP 14.43 Pinus pinaster - INIA_INRA2012 - LG11 i13885s790pg SNP 7.29 (cM) Automated name-based View Maps
F51TW9001A45MK SNP 16.74 Pinus pinaster - G2_G2F_2012 - LG11F F51TW9001A45MK SNP 8.99 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 F51TW9001A45MK SNP 5.24 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 F51TW9001A45MK SNP 11.58 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG11 F51TW9001A45MK SNP 11.84 (cM) Automated name-based View Maps
F51TW9002GFVMT SNP 16.74 Pinus pinaster - INIA_INRA2012 - LG11 F51TW9002GFVMT SNP 5.24 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 F51TW9002GFVMT SNP 1.23 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG11M F51TW9002GFVMT SNP 0.00 (cM) Automated name-based View Maps
BX254138 SNP 16.74 Pinus pinaster - INRA_composite_2012 - LG11 BX254138 SNP 12.67 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG11 BX254138 SNP 12.72 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 BX254138 SNP 5.29 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG11M BX254138 SNP 17.65 (cM) Automated name-based View Maps
AL751188 SNP 16.74 Pinus pinaster - G2_G2M_2012 - LG11M AL751188 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 AL751188 SNP 1.23 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 AL751188 SNP 5.24 (cM) Automated name-based View Maps
m218 SNP 16.74 Pinus pinaster - INRA_composite_2012 - LG11 m218 SNP 11.86 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG11F m218 SNP 9.27 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 m218 SNP 5.29 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG11 m218 SNP 11.62 (cM) Automated name-based View Maps
m219 SNP 16.74 Pinus pinaster - INIA_INRA2012 - LG11 m219 SNP 5.29 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 m219 SNP 11.61 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG11 m219 SNP 11.66 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG11F m219 SNP 9.02 (cM) Automated name-based View Maps
i10965s361pg SNP 16.74 Pinus pinaster - INIA_INRA2012 - LG11 i10965s361pg SNP 5.72 (cM) Automated name-based View Maps
FN706290 SNP 16.74 Pinus pinaster - G2_G2M_2012 - LG11M FN706290 SNP 17.65 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 FN706290 SNP 12.38 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 FN706290 SNP 14.21 (cM) Automated name-based View Maps
CT580852 SNP 17.96 Pinus pinaster - F2_H12_2012 - LG11 CT580852 SNP 11.84 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 CT580852 SNP 5.29 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 CT580852 SNP 11.79 (cM) Automated name-based View Maps
CT577155 SNP 19.31 Pinus pinaster - INIA_INRA2012 - LG11 CT577155 SNP 12.10 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 CT577155 SNP 12.67 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG11 CT577155 SNP 15.08 (cM) Automated name-based View Maps

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