CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-INIA_composite_2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG12
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
EST
SAMPL
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - INIA_composite_2012 [ View Map Set Info ]
Map Name: LG12
Map Start: 0.00 cM
Map Stop: 144.36 cM
Features by Type:
2 EST
138 SNP
9 SAMPL
149 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 149.       of 6 | Next
Pinus pinaster - INIA_composite_2012 - LG12
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
F51TW9001BCX9O SNP 21.03 Pinus pinaster - G2_G2F_2012 - LG12F F51TW9001BCX9O SNP 37.89 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG12 F51TW9001BCX9O SNP 22.56 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG12 F51TW9001BCX9O SNP 21.24 (cM) Automated name-based View Maps
F51TW9001BAW7V SNP 0.00 Pinus pinaster - INIA_INRA2012 - LG12 F51TW9001BAW7V SNP 1.10 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG12 F51TW9001BAW7V SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG12 F51TW9001BAW7V SNP 0.00 (cM) Automated name-based View Maps
EST3C8E78 EST 5.48 Pinus pinaster - INIA_INRA2012 - LG12 EST3C8E78 EST 8.37 (cM) Automated name-based View Maps
Pinus pinaster - INIA_C15_2014 - LG12 EST3C8E78 EST 0.00 (cM) Automated name-based View Maps
EST3C8E55 EST 6.08 Pinus pinaster - INIA_C15_2014 - LG12 EST3C8E55 EST 0.60 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG12 EST3C8E55 EST 8.97 (cM) Automated name-based View Maps
BX249371 SNP 6.27 Pinus pinaster - INIA_INRA2012 - LG12 BX249371 SNP 7.37 (cM) Automated name-based View Maps
m1350 SNP 7.60 Pinus pinaster - INIA_INRA2012 - LG12 m1350 SNP 9.13 (cM) Automated name-based View Maps
i12478s697 SNP 7.60 Pinus pinaster - INIA_INRA2012 - LG12 i12478s697 SNP 9.13 (cM) Automated name-based View Maps
BX250841 SNP 7.97 Pinus pinaster - INIA_INRA2012 - LG12 BX250841 SNP 9.50 (cM) Automated name-based View Maps
m923 SNP 9.05 Pinus pinaster - INIA_INRA2012 - LG12 m923 SNP 10.15 (cM) Automated name-based View Maps
m925 SNP 9.18 Pinus pinaster - INIA_INRA2012 - LG12 m925 SNP 10.28 (cM) Automated name-based View Maps
m958 SNP 9.65 Pinus pinaster - INIA_INRA2012 - LG12 m958 SNP 10.75 (cM) Automated name-based View Maps
BX251466 SNP 10.56 Pinus pinaster - INIA_INRA2012 - LG12 BX251466 SNP 11.66 (cM) Automated name-based View Maps
CT577270 SNP 10.57 Pinus pinaster - INIA_composite_2012 - LG7 CT577270 SNP 69.55 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG7 CT577270 SNP 57.11 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG12 CT577270 SNP 11.67 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG7 CT577270 SNP 61.77 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG7M CT577270 SNP 52.12 (cM) Automated name-based View Maps
FN694735 SNP 10.79 Pinus pinaster - INIA_INRA2012 - LG12 FN694735 SNP 13.68 (cM) Automated name-based View Maps
m755 SNP 11.78 Pinus pinaster - INIA_INRA2012 - LG12 m755 SNP 12.88 (cM) Automated name-based View Maps
m1553 SNP 11.81 Pinus pinaster - INIA_INRA2012 - LG12 m1553 SNP 12.91 (cM) Automated name-based View Maps
384_Myb2 SNP 12.01 Pinus pinaster - INRA_composite_2012 - LG12 384_Myb2 SNP 13.86 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG12M 384_Myb2 SNP 7.08 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG12 384_Myb2 SNP 13.92 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG12F 384_Myb2 SNP 29.76 (cM) Automated name-based View Maps
Myb2 SNP 13.75 Pinus pinaster - INIA_INRA2012 - LG12 Myb2 SNP 16.64 (cM) Automated name-based View Maps
i18460s368 SNP 14.33 Pinus pinaster - INIA_INRA2012 - LG12 i18460s368 SNP 15.86 (cM) Automated name-based View Maps
AL749729 SNP 15.31 Pinus pinaster - INRA_composite_2012 - LG12 AL749729 SNP 15.09 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG12 AL749729 SNP 16.84 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG12M AL749729 SNP 8.31 (cM) Automated name-based View Maps
G-CATA/E38 SAMPL 16.38 Pinus pinaster - INIA_INRA2012 - LG12 G-CATA/E38 SAMPL 17.48 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 G-CATA/E38 SAMPL 66.79 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG11 G-CATA/E38 SAMPL 71.73 (cM) Automated name-based View Maps
i18677s311 SNP 16.74 Pinus pinaster - INIA_INRA2012 - LG12 i18677s311 SNP 18.27 (cM) Automated name-based View Maps
384_Pp1 SNP 16.81 Pinus pinaster - G2_G2F_2012 - LG12F 384_Pp1 SNP 38.88 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG12 384_Pp1 SNP 21.24 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG12 384_Pp1 SNP 20.34 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG12 384_Pp1 SNP 19.52 (cM) Automated name-based View Maps
T-GATA/E36_185 SAMPL 17.09 Pinus pinaster - INIA_INRA2012 - LG12 T-GATA/E36_185 SAMPL 18.19 (cM) Automated name-based View Maps
T-CATA/E32_323 SAMPL 18.00 Pinus pinaster - INIA_INRA2012 - LG12 T-CATA/E32_323 SAMPL 19.10 (cM) Automated name-based View Maps

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