CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-INIA_INRA2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG1
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
eSSR
EST
SAMPL
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - INIA_INRA_2012 [ View Map Set Info ]
Map Name: LG1
Map Start: 0.00 cM
Map Stop: 124.72 cM
Features by Type:
1 EST
216 SNP
4 eSSR
21 SAMPL
242 Total

Map Features

Restrict by Map:
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Items 1 to 25 of 242.       of 10 | Next
Pinus pinaster - INIA_INRA_2012 - LG1
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
F51TW9001A34NZ SNP 0.00 Pinus pinaster - INRA_composite_2012 - LG1 F51TW9001A34NZ SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG1F F51TW9001A34NZ SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG1 F51TW9001A34NZ SNP 0.00 (cM) Automated name-based View Maps
BX679184 SNP 3.24 Pinus pinaster - F2_H12_2012 - LG1 BX679184 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 BX679184 SNP 3.24 (cM) Automated name-based View Maps
F51TW9001AGDRR SNP 3.24 Pinus pinaster - G2_G2M_2012 - LG1M F51TW9001AGDRR SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG1 F51TW9001AGDRR SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 F51TW9001AGDRR SNP 3.24 (cM) Automated name-based View Maps
CR394043 SNP 3.24 Pinus pinaster - G2_G2M_2012 - LG1M CR394043 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 CR394043 SNP 3.24 (cM) Automated name-based View Maps
FN692578 SNP 3.24 Pinus pinaster - G2_G2M_2012 - LG1M FN692578 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 FN692578 SNP 3.24 (cM) Automated name-based View Maps
m846 SNP 3.24 Pinus pinaster - G2_G2M_2012 - LG1M m846 SNP 0.52 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 m846 SNP 3.24 (cM) Automated name-based View Maps
m289 SNP 7.17 Pinus pinaster - INIA_composite_2012 - LG1 m289 SNP 7.17 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG1F m289 SNP 3.44 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG1 m289 SNP 0.20 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 m289 SNP 3.44 (cM) Automated name-based View Maps
BX249690 SNP 7.65 Pinus pinaster - G2_G2M_2012 - LG1M BX249690 SNP 2.47 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 BX249690 SNP 3.92 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG1 BX249690 SNP 0.68 (cM) Automated name-based View Maps
BX253724 SNP 7.65 Pinus pinaster - INRA_composite_2012 - LG1 BX253724 SNP 3.92 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG1F BX253724 SNP 3.48 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG1 BX253724 SNP 0.68 (cM) Automated name-based View Maps
i14266s112pg SNP 9.07 Pinus pinaster - INIA_composite_2012 - LG1 i14266s112pg SNP 16.26 (cM) Automated name-based View Maps
BX254593 SNP 9.22 Pinus pinaster - F2_H12_2012 - LG1 BX254593 SNP 2.25 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG1M BX254593 SNP 4.95 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 BX254593 SNP 5.49 (cM) Automated name-based View Maps
BX678903 SNP 9.22 Pinus pinaster - F2_H12_2012 - LG1 BX678903 SNP 6.20 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 BX678903 SNP 5.49 (cM) Automated name-based View Maps
BX676894 SNP 10.10 Pinus pinaster - INRA_composite_2012 - LG1 BX676894 SNP 6.37 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG1F BX676894 SNP 5.93 (cM) Automated name-based View Maps
BX251336 SNP 10.10 Pinus pinaster - INIA_composite_2012 - LG1 BX251336 SNP 16.72 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG1F BX251336 SNP 5.93 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 BX251336 SNP 6.37 (cM) Automated name-based View Maps
BX253606 SNP 10.10 Pinus pinaster - INRA_composite_2012 - LG1 BX253606 SNP 6.37 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG1F BX253606 SNP 5.93 (cM) Automated name-based View Maps
i14266s879pg SNP 10.10 Pinus pinaster - INIA_composite_2012 - LG1 i14266s879pg SNP 16.72 (cM) Automated name-based View Maps
i04212s347pg SNP 10.72 Pinus pinaster - INIA_composite_2012 - LG1 i04212s347pg SNP 16.83 (cM) Automated name-based View Maps
BX249345 SNP 11.54 Pinus pinaster - INIA_composite_2012 - LG1 BX249345 SNP 17.96 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 BX249345 SNP 6.37 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG1F BX249345 SNP 5.93 (cM) Automated name-based View Maps
BX253918 SNP 11.54 Pinus pinaster - F2_H12_2012 - LG1 BX253918 SNP 8.73 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 BX253918 SNP 6.62 (cM) Automated name-based View Maps
CT578821 SNP 11.54 Pinus pinaster - INIA_composite_2012 - LG1 CT578821 SNP 17.96 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG1M CT578821 SNP 6.19 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 CT578821 SNP 6.73 (cM) Automated name-based View Maps
ssr_NZPR472 eSSR 11.54 Pinus pinaster - G2_G2F_2012 - LG1F ssr_NZPR472 eSSR 8.02 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 ssr_NZPR472 eSSR 8.46 (cM) Automated name-based View Maps
F51TW9001AI30K SNP 11.92 Pinus pinaster - G2_G2F_2012 - LG1F F51TW9001AI30K SNP 8.40 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 F51TW9001AI30K SNP 8.84 (cM) Automated name-based View Maps
BX255626 SNP 13.14 Pinus pinaster - F2_H12_2012 - LG1 BX255626 SNP 12.17 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 BX255626 SNP 10.06 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG1 BX255626 SNP 17.96 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG1F BX255626 SNP 9.62 (cM) Automated name-based View Maps
CT577538 SNP 13.14 Pinus pinaster - INRA_composite_2012 - LG1 CT577538 SNP 10.06 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG1F CT577538 SNP 9.62 (cM) Automated name-based View Maps
CT583014 SNP 13.14 Pinus pinaster - INRA_composite_2012 - LG1 CT583014 SNP 10.06 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG1F CT583014 SNP 9.62 (cM) Automated name-based View Maps

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