CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-INIA_INRA2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG2
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
eSSR
EST
SAMPL
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - INIA_INRA_2012 [ View Map Set Info ]
Map Name: LG2
Map Start: 0.00 cM
Map Stop: 153.23 cM
Features by Type:
3 EST
222 SNP
1 eSSR
6 SAMPL
232 Total

Map Features

Restrict by Map:
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[ Download Feature Correspondence Data ]
Items 1 to 25 of 232.       of 10 | Next
Pinus pinaster - INIA_INRA_2012 - LG2
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
m1226 SNP 17.62 Pinus pinaster - INIA_composite_2012 - LG2 m1226 SNP 20.88 (cM) Automated name-based View Maps
m943 SNP 0.00 Pinus pinaster - INRA_composite_2012 - LG2 m943 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG2F m943 SNP 4.19 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG2 m943 SNP 0.00 (cM) Automated name-based View Maps
SNPnew96 SNP 0.00 Pinus pinaster - INRA_composite_2012 - LG2 SNPnew96 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG2 SNPnew96 SNP 0.31 (cM) Automated name-based View Maps
SNPnew22 SNP 0.00 Pinus pinaster - INRA_composite_2012 - LG2 SNPnew22 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG2 SNPnew22 SNP 0.31 (cM) Automated name-based View Maps
CT579016 SNP 0.00 Pinus pinaster - G2_G2F_2012 - LG2F CT579016 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG2 CT579016 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG2 CT579016 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG2 CT579016 SNP 1.69 (cM) Automated name-based View Maps
BX255720 SNP 0.86 Pinus pinaster - INIA_composite_2012 - LG2 BX255720 SNP 0.00 (cM) Automated name-based View Maps
F51TW9002I3A5U SNP 1.25 Pinus pinaster - F2_H12_2012 - LG2 F51TW9002I3A5U SNP 1.69 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG2M F51TW9002I3A5U SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG2 F51TW9002I3A5U SNP 1.46 (cM) Automated name-based View Maps
i09713s1932pg SNP 1.49 Pinus pinaster - INIA_composite_2012 - LG2 i09713s1932pg SNP 0.00 (cM) Automated name-based View Maps
BX250405 SNP 3.71 Pinus pinaster - INIA_composite_2012 - LG2 BX250405 SNP 3.71 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG2 BX250405 SNP 3.62 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG2 BX250405 SNP 3.93 (cM) Automated name-based View Maps
i18035s88 SNP 3.94 Pinus pinaster - INIA_composite_2012 - LG2 i18035s88 SNP 4.37 (cM) Automated name-based View Maps
AL749753 SNP 3.94 Pinus pinaster - G2_G2F_2012 - LG2F AL749753 SNP 4.59 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG2 AL749753 SNP 3.96 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG2 AL749753 SNP 4.37 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG2 AL749753 SNP 3.65 (cM) Automated name-based View Maps
CT580167 SNP 5.61 Pinus pinaster - INIA_composite_2012 - LG2 CT580167 SNP 4.37 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG2 CT580167 SNP 5.33 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG2 CT580167 SNP 5.64 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG2F CT580167 SNP 4.59 (cM) Automated name-based View Maps
CR393927 SNP 5.61 Pinus pinaster - G2_G2F_2012 - LG2F CR393927 SNP 4.59 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG2 CR393927 SNP 5.33 (cM) Automated name-based View Maps
m37 SNP 6.06 Pinus pinaster - G2_G2F_2012 - LG2F m37 SNP 5.05 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG2 m37 SNP 5.78 (cM) Automated name-based View Maps
FN695650 SNP 6.20 Pinus pinaster - INIA_composite_2012 - LG2 FN695650 SNP 4.37 (cM) Automated name-based View Maps
i13547s741 SNP 6.57 Pinus pinaster - INIA_composite_2012 - LG2 i13547s741 SNP 4.37 (cM) Automated name-based View Maps
CT582330 SNP 6.86 Pinus pinaster - G2_G2F_2012 - LG2F CT582330 SNP 5.85 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG2 CT582330 SNP 6.58 (cM) Automated name-based View Maps
BX250533 SNP 7.42 Pinus pinaster - F2_H12_2012 - LG2 BX250533 SNP 7.45 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG2 BX250533 SNP 7.14 (cM) Automated name-based View Maps
COS_CT580792 SNP 8.43 Pinus pinaster - F2_H12_2012 - LG2 COS_CT580792 SNP 8.46 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG2 COS_CT580792 SNP 8.15 (cM) Automated name-based View Maps
T-GATA/E41_161 SAMPL 10.91 Pinus pinaster - INIA_composite_2012 - LG2 T-GATA/E41_161 SAMPL 11.35 (cM) Automated name-based View Maps
i15869s643pg SNP 11.05 Pinus pinaster - INIA_composite_2012 - LG2 i15869s643pg SNP 8.37 (cM) Automated name-based View Maps
F51TW9001BCUXW SNP 13.61 Pinus pinaster - INIA_composite_2012 - LG2 F51TW9001BCUXW SNP 4.37 (cM) Automated name-based View Maps
AL750269 SNP 14.42 Pinus pinaster - G2_G2M_2012 - LG2M AL750269 SNP 12.68 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG2 AL750269 SNP 4.37 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG2 AL750269 SNP 14.14 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG2 AL750269 SNP 14.45 (cM) Automated name-based View Maps
BX252355 SNP 14.42 Pinus pinaster - INRA_composite_2012 - LG2 BX252355 SNP 14.14 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG2M BX252355 SNP 12.68 (cM) Automated name-based View Maps
CT583249 SNP 17.32 Pinus pinaster - INRA_composite_2012 - LG2 CT583249 SNP 16.64 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG2 CT583249 SNP 16.96 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG2 CT583249 SNP 20.90 (cM) Automated name-based View Maps

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