CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-INIA_INRA2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG4
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
eSSR
EST
SAMPL
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - INIA_INRA_2012 [ View Map Set Info ]
Map Name: LG4
Map Start: 0.00 cM
Map Stop: 139.47 cM
Features by Type:
6 EST
222 SNP
2 eSSR
8 SAMPL
238 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 238.       of 10 | Next
Pinus pinaster - INIA_INRA_2012 - LG4
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
F51TW9002INGUN SNP 0.00 Pinus pinaster - G2_G2M_2012 - LG4M F51TW9002INGUN SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG4 F51TW9002INGUN SNP 0.00 (cM) Automated name-based View Maps
CT578288 SNP 0.00 Pinus pinaster - G2_G2M_2012 - LG4M CT578288 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG4 CT578288 SNP 1.63 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG4 CT578288 SNP 0.00 (cM) Automated name-based View Maps
F51TW9001AW1KL SNP 3.34 Pinus pinaster - G2_G2F_2012 - LG4F F51TW9001AW1KL SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG4 F51TW9001AW1KL SNP 4.34 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG4 F51TW9001AW1KL SNP 3.34 (cM) Automated name-based View Maps
C-CATA/E46_132 SAMPL 4.37 Pinus pinaster - INIA_composite_2012 - LG4 C-CATA/E46_132 SAMPL 4.47 (cM) Automated name-based View Maps
BX682723 SNP 4.37 Pinus pinaster - INIA_composite_2012 - LG4 BX682723 SNP 4.47 (cM) Automated name-based View Maps
COS_CT581617 SNP 4.37 Pinus pinaster - INIA_composite_2012 - LG4 COS_CT581617 SNP 4.47 (cM) Automated name-based View Maps
BX249896 SNP 5.83 Pinus pinaster - G2_G2F_2012 - LG4F BX249896 SNP 2.46 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG4 BX249896 SNP 4.41 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG4 BX249896 SNP 8.35 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG4 BX249896 SNP 0.00 (cM) Automated name-based View Maps
BX250129 SNP 5.83 Pinus pinaster - INRA_composite_2012 - LG4 BX250129 SNP 9.97 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG4M BX250129 SNP 4.91 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG4 BX250129 SNP 6.52 (cM) Automated name-based View Maps
BX784219 SNP 5.83 Pinus pinaster - INIA_composite_2012 - LG4 BX784219 SNP 3.26 (cM) Automated name-based View Maps
m798 SNP 5.96 Pinus pinaster - INIA_composite_2012 - LG4 m798 SNP 7.79 (cM) Automated name-based View Maps
i12653s760 SNP 6.20 Pinus pinaster - INIA_composite_2012 - LG4 i12653s760 SNP 8.35 (cM) Automated name-based View Maps
i12653s487 SNP 6.24 Pinus pinaster - INIA_composite_2012 - LG4 i12653s487 SNP 8.35 (cM) Automated name-based View Maps
F51TW9001BPO0S SNP 6.24 Pinus pinaster - INIA_composite_2012 - LG4 F51TW9001BPO0S SNP 8.07 (cM) Automated name-based View Maps
BX248904 SNP 7.35 Pinus pinaster - INRA_composite_2012 - LG4 BX248904 SNP 5.50 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG4 BX248904 SNP 1.09 (cM) Automated name-based View Maps
F51TW9002F1DX7 SNP 7.35 Pinus pinaster - INRA_composite_2012 - LG4 F51TW9002F1DX7 SNP 5.50 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG4 F51TW9002F1DX7 SNP 1.09 (cM) Automated name-based View Maps
F51TW9001B9EGC SNP 7.35 Pinus pinaster - G2_G2F_2012 - LG4F F51TW9001B9EGC SNP 2.46 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG4 F51TW9001B9EGC SNP 5.80 (cM) Automated name-based View Maps
F51TW9001AZG2W SNP 7.35 Pinus pinaster - INIA_composite_2012 - LG4 F51TW9001AZG2W SNP 8.35 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG4 F51TW9001AZG2W SNP 5.80 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG4F F51TW9001AZG2W SNP 2.46 (cM) Automated name-based View Maps
BX682737 SNP 7.35 Pinus pinaster - INRA_composite_2012 - LG4 BX682737 SNP 5.80 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG4F BX682737 SNP 2.46 (cM) Automated name-based View Maps
F51TW9001AUIZJ SNP 7.35 Pinus pinaster - G2_G2F_2012 - LG4F F51TW9001AUIZJ SNP 2.46 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG4 F51TW9001AUIZJ SNP 5.80 (cM) Automated name-based View Maps
BX681357 SNP 7.35 Pinus pinaster - INRA_composite_2012 - LG4 BX681357 SNP 5.90 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG4 BX681357 SNP 3.56 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG4 BX681357 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG4M BX681357 SNP 0.00 (cM) Automated name-based View Maps
SNPnew109 SNP 7.35 Pinus pinaster - INRA_composite_2012 - LG4 SNPnew109 SNP 5.90 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG4 SNPnew109 SNP 1.51 (cM) Automated name-based View Maps
SNPnew28 SNP 7.35 Pinus pinaster - F2_H12_2012 - LG4 SNPnew28 SNP 2.66 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG4 SNPnew28 SNP 5.90 (cM) Automated name-based View Maps
m668 SNP 7.35 Pinus pinaster - INRA_composite_2012 - LG4 m668 SNP 6.06 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG4F m668 SNP 2.72 (cM) Automated name-based View Maps
BX678393 SNP 7.35 Pinus pinaster - INRA_composite_2012 - LG4 BX678393 SNP 14.85 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG4M BX678393 SNP 9.79 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG4 BX678393 SNP 11.61 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG4 BX678393 SNP 8.07 (cM) Automated name-based View Maps
i10418s659pg SNP 7.35 Pinus pinaster - INIA_composite_2012 - LG4 i10418s659pg SNP 8.36 (cM) Automated name-based View Maps

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