CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-G2_G2F_2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG9F
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - G2_G2F_2012 [ View Map Set Info ]
Map Name: LG9F
Map Start: 0.00 cM
Map Stop: 108.84 cM
Features by Type:
87 SNP
87 Total

Map Features

Restrict by Map:
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Items 1 to 25 of 87.       of 4 | Next
Pinus pinaster - G2_G2F_2012 - LG9F
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
CT578579 SNP 0.00 Pinus pinaster - F2_H12_2012 - LG9 CT578579 SNP 0.94 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG9 CT578579 SNP 2.52 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG9 CT578579 SNP 3.56 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG9 CT578579 SNP 1.75 (cM) Automated name-based View Maps
CT575962 SNP 0.00 Pinus pinaster - INRA_composite_2012 - LG9 CT575962 SNP 2.76 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG9 CT575962 SNP 4.88 (cM) Automated name-based View Maps
BX253305 SNP 0.00 Pinus pinaster - INRA_composite_2012 - LG9 BX253305 SNP 2.76 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG9 BX253305 SNP 7.43 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG9 BX253305 SNP 9.22 (cM) Automated name-based View Maps
CT575718 SNP 0.00 Pinus pinaster - INRA_composite_2012 - LG9 CT575718 SNP 2.76 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG9 CT575718 SNP 4.88 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG9 CT575718 SNP 0.55 (cM) Automated name-based View Maps
BX254643 SNP 3.68 Pinus pinaster - INRA_composite_2012 - LG9 BX254643 SNP 6.44 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG9 BX254643 SNP 7.43 (cM) Automated name-based View Maps
F51TW9001AU1PL SNP 4.91 Pinus pinaster - INRA_composite_2012 - LG9 F51TW9001AU1PL SNP 7.67 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG9 F51TW9001AU1PL SNP 7.43 (cM) Automated name-based View Maps
FN694440 SNP 6.08 Pinus pinaster - INIA_composite_2012 - LG9 FN694440 SNP 6.49 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG9 FN694440 SNP 8.37 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG9 FN694440 SNP 7.43 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG9 FN694440 SNP 6.63 (cM) Automated name-based View Maps
F51TW9001C7ESZ SNP 8.54 Pinus pinaster - F2_H12_2012 - LG9 F51TW9001C7ESZ SNP 11.54 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG9 F51TW9001C7ESZ SNP 11.30 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG9 F51TW9001C7ESZ SNP 12.26 (cM) Automated name-based View Maps
BX252664 SNP 8.54 Pinus pinaster - INIA_INRA2012 - LG9 BX252664 SNP 12.26 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG9 BX252664 SNP 11.30 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG9 BX252664 SNP 14.65 (cM) Automated name-based View Maps
F51TW9001DURUK SNP 8.54 Pinus pinaster - INIA_INRA2012 - LG9 F51TW9001DURUK SNP 12.26 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG9 F51TW9001DURUK SNP 13.03 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG9 F51TW9001DURUK SNP 11.30 (cM) Automated name-based View Maps
CR393146 SNP 27.28 Pinus pinaster - INRA_composite_2012 - LG9 CR393146 SNP 30.06 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG9 CR393146 SNP 26.96 (cM) Automated name-based View Maps
F51TW9001AH9M3 SNP 27.28 Pinus pinaster - INIA_INRA2012 - LG9 F51TW9001AH9M3 SNP 26.96 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG9 F51TW9001AH9M3 SNP 30.06 (cM) Automated name-based View Maps
AL751144 SNP 34.91 Pinus pinaster - INIA_INRA2012 - LG9 AL751144 SNP 27.80 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG9 AL751144 SNP 26.92 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG9 AL751144 SNP 37.76 (cM) Automated name-based View Maps
BX253396 SNP 38.53 Pinus pinaster - INRA_composite_2012 - LG9 BX253396 SNP 41.38 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG9 BX253396 SNP 36.93 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG9 BX253396 SNP 36.40 (cM) Automated name-based View Maps
F51TW9002H9U6A SNP 38.69 Pinus pinaster - INRA_composite_2012 - LG9 F51TW9002H9U6A SNP 41.56 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG9 F51TW9002H9U6A SNP 37.93 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG9 F51TW9002H9U6A SNP 37.02 (cM) Automated name-based View Maps
COS_AL750557 SNP 39.94 Pinus pinaster - INRA_composite_2012 - LG9 COS_AL750557 SNP 42.82 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG9 COS_AL750557 SNP 38.07 (cM) Automated name-based View Maps
BX252563 SNP 39.94 Pinus pinaster - INIA_INRA2012 - LG9 BX252563 SNP 38.07 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG9 BX252563 SNP 42.82 (cM) Automated name-based View Maps
F7JJN6E01BDHKE SNP 39.94 Pinus pinaster - INRA_composite_2012 - LG9 F7JJN6E01BDHKE SNP 42.82 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG9 F7JJN6E01BDHKE SNP 45.63 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG9 F7JJN6E01BDHKE SNP 34.30 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG9 F7JJN6E01BDHKE SNP 37.02 (cM) Automated name-based View Maps
m54 SNP 43.53 Pinus pinaster - INRA_composite_2012 - LG9 m54 SNP 46.51 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG9 m54 SNP 41.56 (cM) Automated name-based View Maps
F51TW9001AX4BI SNP 44.91 Pinus pinaster - INRA_composite_2012 - LG9 F51TW9001AX4BI SNP 47.79 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG9 F51TW9001AX4BI SNP 43.37 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG9 F51TW9001AX4BI SNP 42.84 (cM) Automated name-based View Maps
F51TW9001BM2FG SNP 44.91 Pinus pinaster - INIA_INRA2012 - LG9 F51TW9001BM2FG SNP 42.84 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG9 F51TW9001BM2FG SNP 47.79 (cM) Automated name-based View Maps
384_BOTERO SNP 46.16 Pinus pinaster - INRA_composite_2012 - LG9 384_BOTERO SNP 49.03 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG9 384_BOTERO SNP 44.08 (cM) Automated name-based View Maps
m139 SNP 46.32 Pinus pinaster - INRA_composite_2012 - LG9 m139 SNP 49.12 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG9 m139 SNP 44.17 (cM) Automated name-based View Maps
m140 SNP 46.34 Pinus pinaster - INIA_INRA2012 - LG9 m140 SNP 44.16 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG9 m140 SNP 49.11 (cM) Automated name-based View Maps
BX250307 SNP 49.83 Pinus pinaster - INRA_composite_2012 - LG9 BX250307 SNP 52.69 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG9 BX250307 SNP 47.34 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG9 BX250307 SNP 47.72 (cM) Automated name-based View Maps

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