CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-INIA_INRA2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG6
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
eSSR
EST
SAMPL
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - INIA_INRA_2012 [ View Map Set Info ]
Map Name: LG6
Map Start: 0.00 cM
Map Stop: 126.93 cM
Features by Type:
8 EST
264 SNP
1 eSSR
6 SAMPL
279 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 279.       of 12 | Next
Pinus pinaster - INIA_INRA_2012 - LG6
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
i11895s758 SNP 0.00 Pinus pinaster - INIA_composite_2012 - LG6 i11895s758 SNP 0.00 (cM) Automated name-based View Maps
CT579197 SNP 0.10 Pinus pinaster - INIA_composite_2012 - LG6 CT579197 SNP 0.10 (cM) Automated name-based View Maps
i11895s179 SNP 0.37 Pinus pinaster - INIA_composite_2012 - LG6 i11895s179 SNP 8.21 (cM) Automated name-based View Maps
F51TW9001A8BQ6 SNP 1.45 Pinus pinaster - F2_H12_2012 - LG6 F51TW9001A8BQ6 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 F51TW9001A8BQ6 SNP 0.00 (cM) Automated name-based View Maps
BX679017 SNP 1.45 Pinus pinaster - INIA_composite_2012 - LG6 BX679017 SNP 9.29 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG6 BX679017 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 BX679017 SNP 0.00 (cM) Automated name-based View Maps
BX252510 SNP 1.45 Pinus pinaster - INIA_composite_2012 - LG6 BX252510 SNP 9.29 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 BX252510 SNP 0.67 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG6M BX252510 SNP 1.12 (cM) Automated name-based View Maps
F51TW9002FN4GR SNP 1.46 Pinus pinaster - G2_G2M_2012 - LG6M F51TW9002FN4GR SNP 1.12 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG6 F51TW9002FN4GR SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 F51TW9002FN4GR SNP 0.67 (cM) Automated name-based View Maps
F51TW9001AV518 SNP 1.46 Pinus pinaster - INRA_composite_2012 - LG6 F51TW9001AV518 SNP 0.67 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG6 F51TW9001AV518 SNP 12.99 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG6M F51TW9001AV518 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG6 F51TW9001AV518 SNP 0.67 (cM) Automated name-based View Maps
AL750161 SNP 1.46 Pinus pinaster - INRA_composite_2012 - LG6 AL750161 SNP 0.67 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG6M AL750161 SNP 0.00 (cM) Automated name-based View Maps
m333 SNP 1.46 Pinus pinaster - G2_G2M_2012 - LG6M m333 SNP 0.69 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 m333 SNP 0.67 (cM) Automated name-based View Maps
CT578910 SNP 1.46 Pinus pinaster - G2_G2M_2012 - LG6M CT578910 SNP 1.12 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 CT578910 SNP 0.67 (cM) Automated name-based View Maps
BX254941 SNP 1.46 Pinus pinaster - INIA_composite_2012 - LG6 BX254941 SNP 15.71 (cM) Automated name-based View Maps
F51TW9001BEZX4 SNP 1.50 Pinus pinaster - INRA_composite_2012 - LG6 F51TW9001BEZX4 SNP 0.67 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG6M F51TW9001BEZX4 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG6 F51TW9001BEZX4 SNP 15.75 (cM) Automated name-based View Maps
C-GATA/E40_266 SAMPL 1.52 Pinus pinaster - INIA_composite_2012 - LG6 C-GATA/E40_266 SAMPL 10.44 (cM) Automated name-based View Maps
CT575732 SNP 1.52 Pinus pinaster - INIA_composite_2012 - LG6 CT575732 SNP 10.44 (cM) Automated name-based View Maps
i15393s138 SNP 2.31 Pinus pinaster - INIA_composite_2012 - LG6 i15393s138 SNP 12.99 (cM) Automated name-based View Maps
F5X2MQL01E2EDA SNP 2.98 Pinus pinaster - INIA_composite_2012 - LG6 F5X2MQL01E2EDA SNP 17.23 (cM) Automated name-based View Maps
i11933s327pg SNP 8.78 Pinus pinaster - INIA_composite_2012 - LG6 i11933s327pg SNP 15.12 (cM) Automated name-based View Maps
i01968s2104 SNP 8.82 Pinus pinaster - INIA_composite_2012 - LG6 i01968s2104 SNP 15.16 (cM) Automated name-based View Maps
i20770s319 SNP 8.85 Pinus pinaster - INIA_composite_2012 - LG6 i20770s319 SNP 15.19 (cM) Automated name-based View Maps
i01968s1885 SNP 9.74 Pinus pinaster - INIA_composite_2012 - LG6 i01968s1885 SNP 16.08 (cM) Automated name-based View Maps
i11486s713pg SNP 10.11 Pinus pinaster - INIA_composite_2012 - LG6 i11486s713pg SNP 13.79 (cM) Automated name-based View Maps
i12168s1024pg SNP 10.12 Pinus pinaster - INIA_composite_2012 - LG6 i12168s1024pg SNP 13.79 (cM) Automated name-based View Maps
i17956s183 SNP 10.12 Pinus pinaster - INIA_composite_2012 - LG6 i17956s183 SNP 17.96 (cM) Automated name-based View Maps
F51TW9001AX401 SNP 10.69 Pinus pinaster - INIA_composite_2012 - LG6 F51TW9001AX401 SNP 18.53 (cM) Automated name-based View Maps

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