CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-INIA_INRA2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG7
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
eSSR
EST
SAMPL
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - INIA_INRA_2012 [ View Map Set Info ]
Map Name: LG7
Map Start: 0.00 cM
Map Stop: 142.08 cM
Features by Type:
3 EST
242 SNP
1 eSSR
8 SAMPL
254 Total

Map Features

Restrict by Map:
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[ Download Feature Correspondence Data ]
Items 1 to 25 of 254.       of 11 | Next
Pinus pinaster - INIA_INRA_2012 - LG7
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
m1246 SNP 0.00 Pinus pinaster - INRA_composite_2012 - LG7 m1246 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG7 m1246 SNP 0.00 (cM) Automated name-based View Maps
m694 SNP 1.63 Pinus pinaster - F2_H12_2012 - LG7 m694 SNP 1.18 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG7 m694 SNP 1.18 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG7 m694 SNP 5.22 (cM) Automated name-based View Maps
CT576711 SNP 1.63 Pinus pinaster - INRA_composite_2012 - LG7 CT576711 SNP 1.63 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG7F CT576711 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG7 CT576711 SNP 0.00 (cM) Automated name-based View Maps
m531 SNP 4.08 Pinus pinaster - INRA_composite_2012 - LG7 m531 SNP 3.36 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG7F m531 SNP 1.73 (cM) Automated name-based View Maps
m785 SNP 4.08 Pinus pinaster - G2_G2M_2012 - LG7M m785 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG7 m785 SNP 6.60 (cM) Automated name-based View Maps
m237 SNP 4.08 Pinus pinaster - INRA_composite_2012 - LG7 m237 SNP 7.28 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG7 m237 SNP 7.28 (cM) Automated name-based View Maps
CT578306 SNP 4.08 Pinus pinaster - INIA_composite_2012 - LG7 CT578306 SNP 7.67 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG7 CT578306 SNP 8.47 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG7M CT578306 SNP 1.87 (cM) Automated name-based View Maps
BX252869 SNP 4.21 Pinus pinaster - INRA_composite_2012 - LG7 BX252869 SNP 8.47 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG7M BX252869 SNP 1.87 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG7 BX252869 SNP 7.80 (cM) Automated name-based View Maps
F51TW9001A0RML SNP 4.24 Pinus pinaster - INRA_composite_2012 - LG7 F51TW9001A0RML SNP 1.63 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG7 F51TW9001A0RML SNP 7.83 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG7 F51TW9001A0RML SNP 1.63 (cM) Automated name-based View Maps
FN695545 SNP 4.24 Pinus pinaster - INRA_composite_2012 - LG7 FN695545 SNP 1.63 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG7 FN695545 SNP 1.63 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG7F FN695545 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG7 FN695545 SNP 7.83 (cM) Automated name-based View Maps
BX251816 SNP 4.24 Pinus pinaster - INIA_composite_2012 - LG7 BX251816 SNP 0.05 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG7 BX251816 SNP 1.76 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG7 BX251816 SNP 1.76 (cM) Automated name-based View Maps
i11168s1245pg SNP 4.24 Pinus pinaster - INIA_composite_2012 - LG7 i11168s1245pg SNP 1.36 (cM) Automated name-based View Maps
i13430s117 SNP 4.24 Pinus pinaster - INIA_composite_2012 - LG7 i13430s117 SNP 6.98 (cM) Automated name-based View Maps
i11319s847pg SNP 4.28 Pinus pinaster - INIA_composite_2012 - LG7 i11319s847pg SNP 7.83 (cM) Automated name-based View Maps
m563 SNP 4.38 Pinus pinaster - F2_H12_2012 - LG7 m563 SNP 1.90 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG7 m563 SNP 1.90 (cM) Automated name-based View Maps
i14401s747 SNP 4.51 Pinus pinaster - INIA_composite_2012 - LG7 i14401s747 SNP 8.10 (cM) Automated name-based View Maps
m528 SNP 4.62 Pinus pinaster - INIA_composite_2012 - LG7 m528 SNP 7.86 (cM) Automated name-based View Maps
i10678s914pg SNP 4.62 Pinus pinaster - INIA_composite_2012 - LG7 i10678s914pg SNP 8.21 (cM) Automated name-based View Maps
i10684s1059 SNP 5.57 Pinus pinaster - INIA_composite_2012 - LG7 i10684s1059 SNP 9.16 (cM) Automated name-based View Maps
CT581193 SNP 8.77 Pinus pinaster - INIA_composite_2012 - LG7 CT581193 SNP 11.65 (cM) Automated name-based View Maps
F51TW9002FVR6I SNP 11.61 Pinus pinaster - F2_H12_2012 - LG7 F51TW9002FVR6I SNP 2.16 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG7 F51TW9002FVR6I SNP 2.16 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG7 F51TW9002FVR6I SNP 14.49 (cM) Automated name-based View Maps
BX249122 SNP 11.61 Pinus pinaster - INIA_composite_2012 - LG7 BX249122 SNP 14.49 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG7M BX249122 SNP 1.87 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG7 BX249122 SNP 8.47 (cM) Automated name-based View Maps
BX000576 SNP 12.38 Pinus pinaster - INIA_composite_2012 - LG7 BX000576 SNP 15.79 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG7 BX000576 SNP 8.47 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG7 BX000576 SNP 8.47 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG7M BX000576 SNP 3.11 (cM) Automated name-based View Maps
BX682573 SNP 12.38 Pinus pinaster - INIA_composite_2012 - LG7 BX682573 SNP 15.79 (cM) Automated name-based View Maps
i11154s1228pg SNP 12.38 Pinus pinaster - INIA_composite_2012 - LG7 i11154s1228pg SNP 15.79 (cM) Automated name-based View Maps

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