CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Pinus pinaster-INIA_INRA2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG8
Start
Stop
Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
eSSR
EST
SAMPL
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - INIA_INRA_2012 [ View Map Set Info ]
Map Name: LG8
Map Start: 0.00 cM
Map Stop: 140.04 cM
Features by Type:
3 EST
189 SNP
1 eSSR
7 SAMPL
200 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 200.       of 8 | Next
Pinus pinaster - INIA_INRA_2012 - LG8
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
F51TW9001CTLDD SNP 0.00 Pinus pinaster - F2_H12_2012 - LG8_1 F51TW9001CTLDD SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG8M F51TW9001CTLDD SNP 0.06 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 F51TW9001CTLDD SNP 0.00 (cM) Automated name-based View Maps
SNPnew29 SNP 0.00 Pinus pinaster - INRA_composite_2012 - LG8 SNPnew29 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG8_1 SNPnew29 SNP 0.08 (cM) Automated name-based View Maps
BX250815 SNP 0.00 Pinus pinaster - INIA_composite_2012 - LG8 BX250815 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 BX250815 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG8_1 BX250815 SNP 0.66 (cM) Automated name-based View Maps
BX249608 SNP 0.00 Pinus pinaster - INRA_composite_2012 - LG8 BX249608 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG8M BX249608 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG8 BX249608 SNP 5.92 (cM) Automated name-based View Maps
F51TW9001AE2WV SNP 1.52 Pinus pinaster - INRA_composite_2012 - LG8 F51TW9001AE2WV SNP 1.52 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG8M F51TW9001AE2WV SNP 0.06 (cM) Automated name-based View Maps
BX678723 SNP 1.52 Pinus pinaster - G2_G2M_2012 - LG8M BX678723 SNP 0.06 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 BX678723 SNP 1.52 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG8 BX678723 SNP 5.85 (cM) Automated name-based View Maps
BX251432 SNP 3.23 Pinus pinaster - INRA_composite_2012 - LG8 BX251432 SNP 3.23 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG8_1 BX251432 SNP 3.89 (cM) Automated name-based View Maps
F51TW9001CPV5N SNP 3.87 Pinus pinaster - G2_G2M_2012 - LG8M F51TW9001CPV5N SNP 2.41 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 F51TW9001CPV5N SNP 3.87 (cM) Automated name-based View Maps
COS_BX784129 SNP 5.85 Pinus pinaster - INIA_composite_2012 - LG8 COS_BX784129 SNP 12.78 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG8M COS_BX784129 SNP 3.62 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 COS_BX784129 SNP 5.08 (cM) Automated name-based View Maps
CT580767 SNP 5.85 Pinus pinaster - INRA_composite_2012 - LG8 CT580767 SNP 5.08 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG8M CT580767 SNP 3.62 (cM) Automated name-based View Maps
BX677519 SNP 5.85 Pinus pinaster - INRA_composite_2012 - LG8 BX677519 SNP 7.54 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG8_1 BX677519 SNP 8.20 (cM) Automated name-based View Maps
CR393140 SNP 5.85 Pinus pinaster - F2_H12_2012 - LG8_1 CR393140 SNP 9.98 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 CR393140 SNP 9.32 (cM) Automated name-based View Maps
BX249662 SNP 5.85 Pinus pinaster - INRA_composite_2012 - LG8 BX249662 SNP 10.09 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG8_1 BX249662 SNP 10.75 (cM) Automated name-based View Maps
FN694732 SNP 5.85 Pinus pinaster - INIA_composite_2012 - LG8 FN694732 SNP 18.37 (cM) Automated name-based View Maps
i10690s1105pg SNP 5.85 Pinus pinaster - INIA_composite_2012 - LG8 i10690s1105pg SNP 2.77 (cM) Automated name-based View Maps
i10690s1328pg SNP 5.85 Pinus pinaster - INIA_composite_2012 - LG8 i10690s1328pg SNP 2.78 (cM) Automated name-based View Maps
F51TW9001D7H8P SNP 5.85 Pinus pinaster - INIA_composite_2012 - LG8 F51TW9001D7H8P SNP 5.85 (cM) Automated name-based View Maps
BX249015 SNP 5.85 Pinus pinaster - F2_H12_2012 - LG5 BX249015 SNP 58.48 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG5F BX249015 SNP 59.88 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG8 BX249015 SNP 13.80 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 BX249015 SNP 53.56 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG5 BX249015 SNP 74.20 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 BX249015 SNP 47.56 (cM) Automated name-based View Maps
BX679165 SNP 5.85 Pinus pinaster - INIA_composite_2012 - LG8 BX679165 SNP 17.60 (cM) Automated name-based View Maps
AL750825 SNP 6.56 Pinus pinaster - INRA_composite_2012 - LG8 AL750825 SNP 10.80 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG8_1 AL750825 SNP 10.75 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG8F AL750825 SNP 1.41 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG8M AL750825 SNP 7.27 (cM) Automated name-based View Maps
estAbWS2_AG3.18 EST 6.56 Pinus pinaster - G2_G2F_2012 - LG8F estAbWS2_AG3.18 EST 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 estAbWS2_AG3.18 EST 10.80 (cM) Automated name-based View Maps
F51TW9001ALR0F SNP 16.42 Pinus pinaster - F2_H12_2012 - LG8_1 F51TW9001ALR0F SNP 12.05 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 F51TW9001ALR0F SNP 11.39 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG8 F51TW9001ALR0F SNP 28.36 (cM) Automated name-based View Maps
BX249150 SNP 18.03 Pinus pinaster - INIA_composite_2012 - LG8 BX249150 SNP 8.78 (cM) Automated name-based View Maps
i13939s475 SNP 18.36 Pinus pinaster - INIA_composite_2012 - LG8 i13939s475 SNP 30.79 (cM) Automated name-based View Maps
i13939s680 SNP 18.57 Pinus pinaster - INIA_composite_2012 - LG8 i13939s680 SNP 31.00 (cM) Automated name-based View Maps

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