CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-G2_G2F_2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG10F
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
EST
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - G2_G2F_2012 [ View Map Set Info ]
Map Name: LG10F
Map Start: 0.00 cM
Map Stop: 127.72 cM
Features by Type:
4 EST
73 SNP
77 Total

Map Features

Restrict by Map:
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Items 1 to 25 of 77.       of 4 | Next
Pinus pinaster - G2_G2F_2012 - LG10F
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
CT575880 SNP 0.00 Pinus pinaster - INIA_composite_2012 - LG10 CT575880 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG10 CT575880 SNP 0.95 (cM) Automated name-based View Maps
BX254530 SNP 2.53 Pinus pinaster - INRA_composite_2012 - LG10 BX254530 SNP 4.24 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG10 BX254530 SNP 4.24 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG10 BX254530 SNP 1.98 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG10 BX254530 SNP 3.90 (cM) Automated name-based View Maps
BX251885 SNP 3.80 Pinus pinaster - INIA_INRA2012 - LG10 BX251885 SNP 4.24 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG10 BX251885 SNP 4.24 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG10 BX251885 SNP 3.90 (cM) Automated name-based View Maps
AL750171 SNP 3.80 Pinus pinaster - INRA_composite_2012 - LG10 AL750171 SNP 9.37 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG10 AL750171 SNP 9.37 (cM) Automated name-based View Maps
m1004 SNP 6.83 Pinus pinaster - INRA_composite_2012 - LG10 m1004 SNP 12.73 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG10 m1004 SNP 6.89 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG10 m1004 SNP 4.63 (cM) Automated name-based View Maps
F51TW9001B3CSX SNP 15.35 Pinus pinaster - INIA_INRA2012 - LG10 F51TW9001B3CSX SNP 16.82 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG10 F51TW9001B3CSX SNP 27.74 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG10 F51TW9001B3CSX SNP 21.14 (cM) Automated name-based View Maps
m256 SNP 16.61 Pinus pinaster - INIA_INRA2012 - LG10 m256 SNP 18.08 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG10 m256 SNP 22.40 (cM) Automated name-based View Maps
F51TW9001A074I SNP 24.45 Pinus pinaster - INIA_INRA2012 - LG10 F51TW9001A074I SNP 30.11 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG10 F51TW9001A074I SNP 30.28 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG10 F51TW9001A074I SNP 40.29 (cM) Automated name-based View Maps
F51TW9002GW8NX SNP 26.76 Pinus pinaster - INIA_INRA2012 - LG10 F51TW9002GW8NX SNP 32.42 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG10 F51TW9002GW8NX SNP 32.70 (cM) Automated name-based View Maps
BX252263 SNP 26.77 Pinus pinaster - INIA_composite_2012 - LG10 BX252263 SNP 38.30 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG10 BX252263 SNP 32.65 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG10 BX252263 SNP 30.37 (cM) Automated name-based View Maps
F51TW9001AF6YM SNP 26.77 Pinus pinaster - INIA_INRA2012 - LG10 F51TW9001AF6YM SNP 30.84 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG10 F51TW9001AF6YM SNP 32.65 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG10 F51TW9001AF6YM SNP 38.77 (cM) Automated name-based View Maps
FN693842 SNP 30.51 Pinus pinaster - INIA_composite_2012 - LG10 FN693842 SNP 44.41 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG10 FN693842 SNP 36.48 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG10 FN693842 SNP 36.41 (cM) Automated name-based View Maps
BX255014 SNP 30.51 Pinus pinaster - INRA_composite_2012 - LG10 BX255014 SNP 36.41 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG10 BX255014 SNP 37.83 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG10 BX255014 SNP 45.88 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG10 BX255014 SNP 46.44 (cM) Automated name-based View Maps
AL749993 SNP 30.51 Pinus pinaster - INRA_composite_2012 - LG10 AL749993 SNP 36.41 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG10 AL749993 SNP 36.13 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG10 AL749993 SNP 44.39 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG10 AL749993 SNP 44.06 (cM) Automated name-based View Maps
m359 SNP 31.57 Pinus pinaster - INRA_composite_2012 - LG10 m359 SNP 37.22 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG10 m359 SNP 37.83 (cM) Automated name-based View Maps
BX250449 SNP 49.40 Pinus pinaster - INIA_INRA2012 - LG10 BX250449 SNP 55.26 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG10 BX250449 SNP 54.58 (cM) Automated name-based View Maps
BX682767 SNP 53.50 Pinus pinaster - F2_H12_2012 - LG10 BX682767 SNP 65.30 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG10 BX682767 SNP 59.52 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG10 BX682767 SNP 59.05 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG10 BX682767 SNP 61.12 (cM) Automated name-based View Maps
FN564389 SNP 57.30 Pinus pinaster - INIA_INRA2012 - LG10 FN564389 SNP 65.31 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG10 FN564389 SNP 68.21 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG10 FN564389 SNP 62.42 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG10M FN564389 SNP 66.50 (cM) Automated name-based View Maps
estPpINR_AS01H04 EST 60.71 Pinus pinaster - INIA_INRA2012 - LG10 estPpINR_AS01H04 EST 65.52 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG10 estPpINR_AS01H04 EST 62.63 (cM) Automated name-based View Maps
FN693976 SNP 62.40 Pinus pinaster - INIA_composite_2012 - LG10 FN693976 SNP 68.42 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG10 FN693976 SNP 64.15 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG10 FN693976 SNP 66.65 (cM) Automated name-based View Maps
m526 SNP 64.93 Pinus pinaster - INRA_composite_2012 - LG10 m526 SNP 66.67 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG10 m526 SNP 69.56 (cM) Automated name-based View Maps
AL750495 SNP 67.09 Pinus pinaster - INIA_INRA2012 - LG10 AL750495 SNP 71.64 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 AL750495 SNP 65.45 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG10 AL750495 SNP 68.75 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 AL750495 SNP 63.90 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG8M AL750495 SNP 63.99 (cM) Automated name-based View Maps
F51TW9001CKM93 SNP 68.44 Pinus pinaster - INRA_composite_2012 - LG10 F51TW9001CKM93 SNP 70.11 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG10 F51TW9001CKM93 SNP 73.00 (cM) Automated name-based View Maps
BX250531 SNP 70.79 Pinus pinaster - INRA_composite_2012 - LG10 BX250531 SNP 72.49 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG10 BX250531 SNP 82.80 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG10 BX250531 SNP 86.54 (cM) Automated name-based View Maps
estPpINR_Pp.ap23 EST 71.59 Pinus pinaster - INRA_composite_2012 - LG10 estPpINR_Pp.ap23 EST 73.36 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG10 estPpINR_Pp.ap23 EST 82.88 (cM) Automated name-based View Maps

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