CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-INIA_INRA2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG10
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
eSSR
EST
SAMPL
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - INIA_INRA_2012 [ View Map Set Info ]
Map Name: LG10
Map Start: 0.00 cM
Map Stop: 148.36 cM
Features by Type:
3 EST
211 SNP
2 eSSR
20 SAMPL
236 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 236.       of 10 | Next
Pinus pinaster - INIA_INRA_2012 - LG10
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
m102 SNP 0.00 Pinus pinaster - INRA_composite_2012 - LG10 m102 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG10 m102 SNP 0.00 (cM) Automated name-based View Maps
m450 SNP 0.14 Pinus pinaster - INRA_composite_2012 - LG10 m450 SNP 0.14 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG10M m450 SNP 0.00 (cM) Automated name-based View Maps
BX679618 SNP 0.95 Pinus pinaster - INIA_composite_2012 - LG10 BX679618 SNP 0.00 (cM) Automated name-based View Maps
CT575880 SNP 0.95 Pinus pinaster - INIA_composite_2012 - LG10 CT575880 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG10F CT575880 SNP 0.00 (cM) Automated name-based View Maps
CT580097 SNP 2.77 Pinus pinaster - F2_H12_2012 - LG10 CT580097 SNP 2.77 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG10 CT580097 SNP 2.77 (cM) Automated name-based View Maps
SNPnew94 SNP 3.67 Pinus pinaster - INRA_composite_2012 - LG10 SNPnew94 SNP 3.67 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG10 SNPnew94 SNP 3.67 (cM) Automated name-based View Maps
FN694683 SNP 3.90 Pinus pinaster - F2_H12_2012 - LG10 FN694683 SNP 3.90 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG10 FN694683 SNP 3.90 (cM) Automated name-based View Maps
FN256445 SNP 4.24 Pinus pinaster - F2_H12_2012 - LG10 FN256445 SNP 3.90 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG10M FN256445 SNP 8.80 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG10 FN256445 SNP 4.24 (cM) Automated name-based View Maps
F51TW9001BKZIN SNP 4.24 Pinus pinaster - F2_H12_2012 - LG10 F51TW9001BKZIN SNP 3.90 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG10M F51TW9001BKZIN SNP 8.80 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG10 F51TW9001BKZIN SNP 4.24 (cM) Automated name-based View Maps
BX251885 SNP 4.24 Pinus pinaster - F2_H12_2012 - LG10 BX251885 SNP 3.90 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG10 BX251885 SNP 4.24 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG10F BX251885 SNP 3.80 (cM) Automated name-based View Maps
F51TW9001B9TZM SNP 4.24 Pinus pinaster - INRA_composite_2012 - LG10 F51TW9001B9TZM SNP 4.24 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG10 F51TW9001B9TZM SNP 3.90 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG10M F51TW9001B9TZM SNP 8.80 (cM) Automated name-based View Maps
BX254530 SNP 4.24 Pinus pinaster - G2_G2F_2012 - LG10F BX254530 SNP 2.53 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG10 BX254530 SNP 1.98 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG10 BX254530 SNP 4.24 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG10 BX254530 SNP 3.90 (cM) Automated name-based View Maps
SNPnew84 SNP 4.24 Pinus pinaster - F2_H12_2012 - LG10 SNPnew84 SNP 4.24 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG10 SNPnew84 SNP 4.24 (cM) Automated name-based View Maps
i11825s750pg SNP 4.24 Pinus pinaster - INIA_composite_2012 - LG10 i11825s750pg SNP 3.29 (cM) Automated name-based View Maps
SNPnew83 SNP 4.25 Pinus pinaster - F2_H12_2012 - LG10 SNPnew83 SNP 4.25 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG10 SNPnew83 SNP 4.25 (cM) Automated name-based View Maps
SNPnew73 SNP 4.47 Pinus pinaster - INRA_composite_2012 - LG10 SNPnew73 SNP 4.47 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG10 SNPnew73 SNP 4.47 (cM) Automated name-based View Maps
AL750287 SNP 5.00 Pinus pinaster - F2_H12_2012 - LG10 AL750287 SNP 5.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG10 AL750287 SNP 5.00 (cM) Automated name-based View Maps
m1004 SNP 6.89 Pinus pinaster - INRA_composite_2012 - LG10 m1004 SNP 12.73 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG10F m1004 SNP 6.83 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG10 m1004 SNP 4.63 (cM) Automated name-based View Maps
m1404 SNP 8.07 Pinus pinaster - INRA_composite_2012 - LG10 m1404 SNP 8.07 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG10 m1404 SNP 8.07 (cM) Automated name-based View Maps
F51TW9001DBUN7 SNP 8.94 Pinus pinaster - INRA_composite_2012 - LG10 F51TW9001DBUN7 SNP 8.94 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG10M F51TW9001DBUN7 SNP 8.80 (cM) Automated name-based View Maps
BX681924 SNP 8.94 Pinus pinaster - INRA_composite_2012 - LG10 BX681924 SNP 8.94 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG10M BX681924 SNP 8.80 (cM) Automated name-based View Maps
BX251991 SNP 8.94 Pinus pinaster - G2_G2M_2012 - LG10M BX251991 SNP 8.80 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG10 BX251991 SNP 8.94 (cM) Automated name-based View Maps
m1308 SNP 9.06 Pinus pinaster - INIA_composite_2012 - LG10 m1308 SNP 8.11 (cM) Automated name-based View Maps
T-CATA/E34_84 SAMPL 9.36 Pinus pinaster - INIA_composite_2012 - LG10 T-CATA/E34_84 SAMPL 11.63 (cM) Automated name-based View Maps
i14905s223pg SNP 9.36 Pinus pinaster - INIA_composite_2012 - LG10 i14905s223pg SNP 11.72 (cM) Automated name-based View Maps

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