CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-G2_G2F_2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG11F
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - G2_G2F_2012 [ View Map Set Info ]
Map Name: LG11F
Map Start: 0.00 cM
Map Stop: 100.48 cM
Features by Type:
79 SNP
79 Total

Map Features

Restrict by Map:
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Items 1 to 25 of 79.       of 4 | Next
Pinus pinaster - G2_G2F_2012 - LG11F
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
BX677906 SNP 33.54 Pinus pinaster - INRA_composite_2012 - LG11 BX677906 SNP 42.53 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 BX677906 SNP 44.30 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG11 BX677906 SNP 47.92 (cM) Automated name-based View Maps
CR392669 SNP 0.00 Pinus pinaster - INIA_composite_2012 - LG11 CR392669 SNP 8.69 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 CR392669 SNP 5.24 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG11M CR392669 SNP 3.68 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 CR392669 SNP 2.59 (cM) Automated name-based View Maps
F51TW9001A45MK SNP 8.99 Pinus pinaster - F2_H12_2012 - LG11 F51TW9001A45MK SNP 11.84 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 F51TW9001A45MK SNP 11.58 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG11 F51TW9001A45MK SNP 16.74 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 F51TW9001A45MK SNP 5.24 (cM) Automated name-based View Maps
F51TW9001EAEEA SNP 8.99 Pinus pinaster - INIA_INRA2012 - LG11 F51TW9001EAEEA SNP 5.24 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 F51TW9001EAEEA SNP 11.58 (cM) Automated name-based View Maps
m219 SNP 9.02 Pinus pinaster - INRA_composite_2012 - LG11 m219 SNP 11.61 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 m219 SNP 5.29 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG11 m219 SNP 11.66 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG11 m219 SNP 16.74 (cM) Automated name-based View Maps
m218 SNP 9.27 Pinus pinaster - F2_H12_2012 - LG11 m218 SNP 11.62 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG11 m218 SNP 16.74 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 m218 SNP 11.86 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 m218 SNP 5.29 (cM) Automated name-based View Maps
m512 SNP 9.80 Pinus pinaster - INIA_INRA2012 - LG11 m512 SNP 5.24 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 m512 SNP 12.39 (cM) Automated name-based View Maps
F5X2MQL01BWPXM SNP 11.46 Pinus pinaster - INRA_composite_2012 - LG11 F5X2MQL01BWPXM SNP 14.05 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG11 F5X2MQL01BWPXM SNP 19.38 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 F5X2MQL01BWPXM SNP 12.17 (cM) Automated name-based View Maps
F7JJN6E01B3AMA SNP 13.72 Pinus pinaster - INIA_INRA2012 - LG11 F7JJN6E01B3AMA SNP 14.48 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 F7JJN6E01B3AMA SNP 16.31 (cM) Automated name-based View Maps
F51TW9001B2OG8 SNP 16.27 Pinus pinaster - INIA_INRA2012 - LG11 F51TW9001B2OG8 SNP 18.33 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 F51TW9001B2OG8 SNP 18.86 (cM) Automated name-based View Maps
F51TW9001BO6SO SNP 16.27 Pinus pinaster - INRA_composite_2012 - LG11 F51TW9001BO6SO SNP 18.93 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 F51TW9001BO6SO SNP 18.40 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG11 F51TW9001BO6SO SNP 22.14 (cM) Automated name-based View Maps
AL749873 SNP 16.27 Pinus pinaster - INRA_composite_2012 - LG11 AL749873 SNP 18.86 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 AL749873 SNP 18.25 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG11 AL749873 SNP 24.16 (cM) Automated name-based View Maps
CT575586 SNP 17.49 Pinus pinaster - INIA_composite_2012 - LG11 CT575586 SNP 27.15 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 CT575586 SNP 21.62 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 CT575586 SNP 20.07 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG11 CT575586 SNP 23.28 (cM) Automated name-based View Maps
CT581353 SNP 21.16 Pinus pinaster - INIA_INRA2012 - LG11 CT581353 SNP 28.22 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG11 CT581353 SNP 30.78 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 CT581353 SNP 26.67 (cM) Automated name-based View Maps
m645 SNP 21.37 Pinus pinaster - INRA_composite_2012 - LG11 m645 SNP 26.88 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 m645 SNP 28.43 (cM) Automated name-based View Maps
FN692409 SNP 26.04 Pinus pinaster - INRA_composite_2012 - LG11 FN692409 SNP 31.55 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 FN692409 SNP 33.07 (cM) Automated name-based View Maps
CR392413 SNP 26.04 Pinus pinaster - INIA_INRA2012 - LG11 CR392413 SNP 33.07 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 CR392413 SNP 31.55 (cM) Automated name-based View Maps
F51TW9001A12VO SNP 27.29 Pinus pinaster - INIA_INRA2012 - LG11 F51TW9001A12VO SNP 34.32 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG11 F51TW9001A12VO SNP 39.68 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 F51TW9001A12VO SNP 32.80 (cM) Automated name-based View Maps
F51TW9001APGAL SNP 27.29 Pinus pinaster - INIA_composite_2012 - LG11 F51TW9001APGAL SNP 39.29 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG11 F51TW9001APGAL SNP 43.13 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 F51TW9001APGAL SNP 37.75 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 F51TW9001APGAL SNP 38.44 (cM) Automated name-based View Maps
BX252216 SNP 28.54 Pinus pinaster - G2_G2M_2012 - LG11M BX252216 SNP 44.48 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 BX252216 SNP 39.38 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG11 BX252216 SNP 44.76 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG11 BX252216 SNP 43.03 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 BX252216 SNP 38.44 (cM) Automated name-based View Maps
F51TW9001BJOW1 SNP 28.54 Pinus pinaster - INIA_composite_2012 - LG11 F51TW9001BJOW1 SNP 42.64 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG11 F51TW9001BJOW1 SNP 43.96 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 F51TW9001BJOW1 SNP 38.44 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 F51TW9001BJOW1 SNP 38.57 (cM) Automated name-based View Maps
BX678864 SNP 28.54 Pinus pinaster - INIA_composite_2012 - LG11 BX678864 SNP 47.30 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG11 BX678864 SNP 44.76 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 BX678864 SNP 39.38 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 BX678864 SNP 39.36 (cM) Automated name-based View Maps
BX677078 SNP 28.54 Pinus pinaster - INIA_INRA2012 - LG11 BX677078 SNP 38.94 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG11 BX677078 SNP 44.76 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG11 BX677078 SNP 43.03 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 BX677078 SNP 39.38 (cM) Automated name-based View Maps
F51TW9001A00X7 SNP 33.54 Pinus pinaster - INIA_INRA2012 - LG11 F51TW9001A00X7 SNP 44.30 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 F51TW9001A00X7 SNP 42.53 (cM) Automated name-based View Maps
BX251173 SNP 35.44 Pinus pinaster - INIA_INRA2012 - LG11 BX251173 SNP 47.13 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 BX251173 SNP 44.44 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG11 BX251173 SNP 53.30 (cM) Automated name-based View Maps

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