CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Pinus pinaster-INIA_INRA2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG12
Start
Stop
Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
eSSR
EST
SAMPL
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - INIA_INRA_2012 [ View Map Set Info ]
Map Name: LG12
Map Start: 0.00 cM
Map Stop: 145.89 cM
Features by Type:
2 EST
250 SNP
1 eSSR
9 SAMPL
262 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 262.       of 11 | Next
Pinus pinaster - INIA_INRA_2012 - LG12
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
F7JJN6E01A5DLC SNP 0.00 Pinus pinaster - F2_H12_2012 - LG12 F7JJN6E01A5DLC SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG12 F7JJN6E01A5DLC SNP 0.00 (cM) Automated name-based View Maps
F51TW9001BQ36P SNP 0.00 Pinus pinaster - F2_H12_2012 - LG12 F51TW9001BQ36P SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG12 F51TW9001BQ36P SNP 0.00 (cM) Automated name-based View Maps
F51TW9001BAW7V SNP 1.10 Pinus pinaster - INIA_composite_2012 - LG12 F51TW9001BAW7V SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG12 F51TW9001BAW7V SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG12 F51TW9001BAW7V SNP 0.00 (cM) Automated name-based View Maps
m407 SNP 1.56 Pinus pinaster - INRA_composite_2012 - LG12 m407 SNP 1.56 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG12 m407 SNP 0.48 (cM) Automated name-based View Maps
F51TW9001APGB7 SNP 1.86 Pinus pinaster - INRA_composite_2012 - LG12 F51TW9001APGB7 SNP 1.86 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG12 F51TW9001APGB7 SNP 0.78 (cM) Automated name-based View Maps
BX248935 SNP 2.08 Pinus pinaster - F2_H12_2012 - LG12 BX248935 SNP 1.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG12 BX248935 SNP 2.08 (cM) Automated name-based View Maps
BX000687 SNP 2.72 Pinus pinaster - G2_G2F_2012 - LG12F BX000687 SNP 7.27 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG12 BX000687 SNP 2.72 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG12 BX000687 SNP 0.00 (cM) Automated name-based View Maps
AL751223 SNP 2.72 Pinus pinaster - F2_H12_2012 - LG12 AL751223 SNP 1.00 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG12F AL751223 SNP 6.15 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG12 AL751223 SNP 2.72 (cM) Automated name-based View Maps
SNPnew2 SNP 2.72 Pinus pinaster - INRA_composite_2012 - LG12 SNPnew2 SNP 2.72 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG12 SNPnew2 SNP 1.15 (cM) Automated name-based View Maps
BX254891 SNP 2.72 Pinus pinaster - F2_H12_2012 - LG12 BX254891 SNP 1.65 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG12 BX254891 SNP 2.72 (cM) Automated name-based View Maps
CT578398 SNP 2.72 Pinus pinaster - F2_H12_2012 - LG12 CT578398 SNP 1.65 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG12 CT578398 SNP 2.72 (cM) Automated name-based View Maps
BX251080 SNP 2.72 Pinus pinaster - INRA_composite_2012 - LG12 BX251080 SNP 2.72 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG12 BX251080 SNP 1.65 (cM) Automated name-based View Maps
AL749766 SNP 2.72 Pinus pinaster - INRA_composite_2012 - LG12 AL749766 SNP 2.72 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG12M AL749766 SNP 2.50 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG12 AL749766 SNP 1.65 (cM) Automated name-based View Maps
m756 SNP 2.72 Pinus pinaster - INRA_composite_2012 - LG12 m756 SNP 2.72 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG12M m756 SNP 6.74 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG12F m756 SNP 0.00 (cM) Automated name-based View Maps
m82 SNP 2.72 Pinus pinaster - INRA_composite_2012 - LG12 m82 SNP 2.72 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG12F m82 SNP 6.04 (cM) Automated name-based View Maps
CT583575 SNP 2.72 Pinus pinaster - G2_G2F_2012 - LG12F CT583575 SNP 6.15 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG12 CT583575 SNP 2.72 (cM) Automated name-based View Maps
FN695368 SNP 2.72 Pinus pinaster - INRA_composite_2012 - LG12 FN695368 SNP 2.72 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG12F FN695368 SNP 7.27 (cM) Automated name-based View Maps
FN693080 SNP 2.72 Pinus pinaster - G2_G2M_2012 - LG12M FN693080 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG12 FN693080 SNP 2.72 (cM) Automated name-based View Maps
AL750175 SNP 2.72 Pinus pinaster - INRA_composite_2012 - LG12 AL750175 SNP 2.72 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG12M AL750175 SNP 5.82 (cM) Automated name-based View Maps
BX678011 SNP 2.72 Pinus pinaster - G2_G2M_2012 - LG12M BX678011 SNP 5.86 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG12 BX678011 SNP 2.72 (cM) Automated name-based View Maps
F51TW9001A4R6D SNP 2.72 Pinus pinaster - G2_G2M_2012 - LG12M F51TW9001A4R6D SNP 5.86 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG12 F51TW9001A4R6D SNP 2.72 (cM) Automated name-based View Maps
m21 SNP 4.03 Pinus pinaster - INRA_composite_2012 - LG12 m21 SNP 4.03 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG12 m21 SNP 2.95 (cM) Automated name-based View Maps
F51TW9001AQAWL SNP 5.19 Pinus pinaster - F2_H12_2012 - LG12 F51TW9001AQAWL SNP 4.11 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG12 F51TW9001AQAWL SNP 5.19 (cM) Automated name-based View Maps
m224 SNP 5.36 Pinus pinaster - INRA_composite_2012 - LG12 m224 SNP 5.36 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG12F m224 SNP 9.92 (cM) Automated name-based View Maps
BX249371 SNP 7.37 Pinus pinaster - INIA_composite_2012 - LG12 BX249371 SNP 6.27 (cM) Automated name-based View Maps

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