CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-G2_G2F_2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG12F
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - G2_G2F_2012 [ View Map Set Info ]
Map Name: LG12F
Map Start: 0.00 cM
Map Stop: 138.18 cM
Features by Type:
97 SNP
97 Total

Map Features

Restrict by Map:
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Items 1 to 25 of 97.       of 4 | Next
Pinus pinaster - G2_G2F_2012 - LG12F
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
m756 SNP 0.00 Pinus pinaster - INRA_composite_2012 - LG12 m756 SNP 2.72 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG12 m756 SNP 2.72 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG12M m756 SNP 6.74 (cM) Automated name-based View Maps
m82 SNP 6.04 Pinus pinaster - INRA_composite_2012 - LG12 m82 SNP 2.72 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG12 m82 SNP 2.72 (cM) Automated name-based View Maps
CT583575 SNP 6.15 Pinus pinaster - INRA_composite_2012 - LG12 CT583575 SNP 2.72 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG12 CT583575 SNP 2.72 (cM) Automated name-based View Maps
AL751223 SNP 6.15 Pinus pinaster - F2_H12_2012 - LG12 AL751223 SNP 1.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG12 AL751223 SNP 2.72 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG12 AL751223 SNP 2.72 (cM) Automated name-based View Maps
BX000687 SNP 7.27 Pinus pinaster - F2_H12_2012 - LG12 BX000687 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG12 BX000687 SNP 2.72 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG12 BX000687 SNP 2.72 (cM) Automated name-based View Maps
FN695368 SNP 7.27 Pinus pinaster - INIA_INRA2012 - LG12 FN695368 SNP 2.72 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG12 FN695368 SNP 2.72 (cM) Automated name-based View Maps
m224 SNP 9.92 Pinus pinaster - INIA_INRA2012 - LG12 m224 SNP 5.36 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG12 m224 SNP 5.36 (cM) Automated name-based View Maps
m721 SNP 18.93 Pinus pinaster - INRA_composite_2012 - LG12 m721 SNP 12.71 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG12 m721 SNP 12.71 (cM) Automated name-based View Maps
m1203 SNP 27.93 Pinus pinaster - INRA_composite_2012 - LG12 m1203 SNP 12.71 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG12 m1203 SNP 12.71 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG12 m1203 SNP 11.64 (cM) Automated name-based View Maps
384_Myb2 SNP 29.76 Pinus pinaster - INRA_composite_2012 - LG12 384_Myb2 SNP 13.86 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG12 384_Myb2 SNP 13.92 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG12 384_Myb2 (0/24) SNP 13.34 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG12M 384_Myb2 SNP 7.08 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG12 384_Myb2 SNP 12.01 (cM) Automated name-based View Maps
m753 SNP 30.32 Pinus pinaster - INIA_INRA2012 - LG12 m753 SNP 14.42 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG12 m753 SNP 14.42 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG12 m753 SNP 13.34 (cM) Automated name-based View Maps
m881 SNP 37.86 Pinus pinaster - F2_H12_2012 - LG12 m881 SNP 21.01 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG12 m881 SNP 21.24 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG12 m881 SNP 22.99 (cM) Automated name-based View Maps
F51TW9001BOM26 SNP 37.89 Pinus pinaster - INRA_composite_2012 - LG12 F51TW9001BOM26 SNP 21.24 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG12 F51TW9001BOM26 SNP 22.99 (cM) Automated name-based View Maps
BX676817 SNP 37.89 Pinus pinaster - INRA_composite_2012 - LG12 BX676817 SNP 21.24 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG12 BX676817 SNP 22.99 (cM) Automated name-based View Maps
F51TW9001BAVPR SNP 37.89 Pinus pinaster - INRA_composite_2012 - LG12 F51TW9001BAVPR SNP 21.24 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG12 F51TW9001BAVPR SNP 20.99 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG12 F51TW9001BAVPR SNP 22.99 (cM) Automated name-based View Maps
F51TW9002G85WW SNP 37.89 Pinus pinaster - INIA_INRA2012 - LG12 F51TW9002G85WW SNP 25.76 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG12 F51TW9002G85WW SNP 20.38 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG12 F51TW9002G85WW SNP 21.27 (cM) Automated name-based View Maps
F51TW9001BCX9O SNP 37.89 Pinus pinaster - INIA_INRA2012 - LG12 F51TW9001BCX9O SNP 22.56 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG12 F51TW9001BCX9O SNP 21.24 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG12 F51TW9001BCX9O SNP 21.03 (cM) Automated name-based View Maps
BX250571 SNP 37.89 Pinus pinaster - INIA_INRA2012 - LG12 BX250571 SNP 22.99 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG12 BX250571 SNP 21.24 (cM) Automated name-based View Maps
384_Pp1 SNP 38.88 Pinus pinaster - INIA_composite_2012 - LG12 384_Pp1 SNP 16.81 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG12 384_Pp1 SNP 20.34 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG12 384_Pp1 SNP 19.52 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG12 384_Pp1 SNP 21.24 (cM) Automated name-based View Maps
m457 SNP 39.07 Pinus pinaster - INRA_composite_2012 - LG12 m457 SNP 20.60 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG12 m457 SNP 18.88 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG12 m457 SNP 20.34 (cM) Automated name-based View Maps
m1371 SNP 39.41 Pinus pinaster - INRA_composite_2012 - LG12 m1371 SNP 22.79 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG12 m1371 SNP 25.76 (cM) Automated name-based View Maps
CT575341 SNP 46.04 Pinus pinaster - INIA_INRA2012 - LG12 CT575341 SNP 26.85 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG12 CT575341 SNP 29.41 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG12 CT575341 SNP 25.32 (cM) Automated name-based View Maps
F51TW9001CJH7E SNP 49.70 Pinus pinaster - INRA_composite_2012 - LG12 F51TW9001CJH7E SNP 36.96 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG12 F51TW9001CJH7E SNP 38.00 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG12 F51TW9001CJH7E SNP 37.26 (cM) Automated name-based View Maps
CT582236 SNP 49.70 Pinus pinaster - INIA_composite_2012 - LG12 CT582236 SNP 40.75 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG12 CT582236 SNP 42.00 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG12 CT582236 SNP 45.32 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG12 CT582236 SNP 44.87 (cM) Automated name-based View Maps
BX253874 SNP 50.93 Pinus pinaster - INIA_INRA2012 - LG12 BX253874 SNP 43.69 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG12 BX253874 SNP 49.34 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG12 BX253874 SNP 51.94 (cM) Automated name-based View Maps

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