CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-G2_G2M_2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG1M
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
eSSR
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - G2_G2M_2012 [ View Map Set Info ]
Map Name: LG1M
Map Start: 0.00 cM
Map Stop: 115.68 cM
Features by Type:
84 SNP
2 eSSR
86 Total

Map Features

Restrict by Map:
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Items 1 to 25 of 86.       of 4 | Next
Pinus pinaster - G2_G2M_2012 - LG1M
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
F51TW9001AGDRR SNP 0.00 Pinus pinaster - F2_H12_2012 - LG1 F51TW9001AGDRR SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 F51TW9001AGDRR SNP 3.24 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 F51TW9001AGDRR SNP 3.24 (cM) Automated name-based View Maps
CR394043 SNP 0.00 Pinus pinaster - INIA_INRA2012 - LG1 CR394043 SNP 3.24 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 CR394043 SNP 3.24 (cM) Automated name-based View Maps
FN692578 SNP 0.00 Pinus pinaster - INIA_INRA2012 - LG1 FN692578 SNP 3.24 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 FN692578 SNP 3.24 (cM) Automated name-based View Maps
m846 SNP 0.52 Pinus pinaster - INIA_INRA2012 - LG1 m846 SNP 3.24 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 m846 SNP 3.24 (cM) Automated name-based View Maps
BX679184 (0/13) SNP 0.00 Pinus pinaster - F2_H12_2012 - LG1 BX679184 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG1F BX679184 (0/13) SNP 3.48 (cM) Automated name-based View Maps
BX249690 SNP 2.47 Pinus pinaster - INRA_composite_2012 - LG1 BX249690 SNP 3.92 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG1 BX249690 SNP 0.68 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 BX249690 SNP 7.65 (cM) Automated name-based View Maps
BX254593 SNP 4.95 Pinus pinaster - F2_H12_2012 - LG1 BX254593 SNP 2.25 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 BX254593 SNP 5.49 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 BX254593 SNP 9.22 (cM) Automated name-based View Maps
CT578821 SNP 6.19 Pinus pinaster - INIA_composite_2012 - LG1 CT578821 SNP 17.96 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 CT578821 SNP 6.73 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 CT578821 SNP 11.54 (cM) Automated name-based View Maps
BX677950 SNP 11.17 Pinus pinaster - INIA_INRA2012 - LG1 BX677950 SNP 14.76 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 BX677950 SNP 11.71 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG1 BX677950 SNP 17.96 (cM) Automated name-based View Maps
F51TW9001DDRPZ SNP 12.44 Pinus pinaster - INIA_INRA2012 - LG1 F51TW9001DDRPZ SNP 16.03 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 F51TW9001DDRPZ SNP 12.98 (cM) Automated name-based View Maps
m1525 SNP 12.82 Pinus pinaster - INIA_INRA2012 - LG1 m1525 SNP 16.41 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 m1525 SNP 13.36 (cM) Automated name-based View Maps
AL749719 SNP 13.69 Pinus pinaster - INRA_composite_2012 - LG1 AL749719 SNP 14.23 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG1 AL749719 SNP 24.30 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 AL749719 SNP 19.44 (cM) Automated name-based View Maps
F51TW9002FUMZ6 SNP 18.57 Pinus pinaster - INIA_composite_2012 - LG1 F51TW9002FUMZ6 SNP 42.81 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 F51TW9002FUMZ6 SNP 19.11 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 F51TW9002FUMZ6 SNP 24.32 (cM) Automated name-based View Maps
F51TW9001BLOLY SNP 21.11 Pinus pinaster - INRA_composite_2012 - LG1 F51TW9001BLOLY SNP 21.65 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 F51TW9001BLOLY SNP 32.76 (cM) Automated name-based View Maps
CT576309 SNP 21.11 Pinus pinaster - INIA_composite_2012 - LG1 CT576309 SNP 50.69 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 CT576309 SNP 44.12 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 CT576309 SNP 29.77 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG1 CT576309 SNP 34.20 (cM) Automated name-based View Maps
ssr_FRPp91 eSSR 29.69 Pinus pinaster - INRA_composite_2012 - LG1 ssr_FRPp91 eSSR 38.35 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 ssr_FRPp91 eSSR 44.12 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG1F ssr_FRPp91 eSSR 42.38 (cM) Automated name-based View Maps
AL750513 SNP 45.12 Pinus pinaster - INRA_composite_2012 - LG1 AL750513 SNP 50.47 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG1 AL750513 SNP 51.43 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 AL750513 SNP 59.13 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG1 AL750513 SNP 59.27 (cM) Automated name-based View Maps
FN694080 SNP 50.86 Pinus pinaster - INIA_INRA2012 - LG1 FN694080 SNP 69.28 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 FN694080 SNP 56.21 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG1 FN694080 SNP 64.69 (cM) Automated name-based View Maps
m1108 SNP 53.03 Pinus pinaster - INRA_composite_2012 - LG1 m1108 SNP 58.38 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 m1108 SNP 73.80 (cM) Automated name-based View Maps
m855 SNP 53.14 Pinus pinaster - INRA_composite_2012 - LG1 m855 SNP 58.48 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 m855 SNP 73.80 (cM) Automated name-based View Maps
FN694912 SNP 58.37 Pinus pinaster - INIA_INRA2012 - LG1 FN694912 SNP 73.80 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 FN694912 SNP 63.72 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG1 FN694912 SNP 75.20 (cM) Automated name-based View Maps
BX254018 SNP 58.37 Pinus pinaster - INRA_composite_2012 - LG1 BX254018 SNP 63.72 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 BX254018 SNP 74.46 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG1 BX254018 SNP 61.86 (cM) Automated name-based View Maps
ssrPp_A5A11 eSSR 61.56 Pinus pinaster - INIA_INRA2012 - LG1 ssrPp_A5A11 eSSR 77.65 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 ssrPp_A5A11 eSSR 66.91 (cM) Automated name-based View Maps
AL750014 SNP 61.93 Pinus pinaster - INRA_composite_2012 - LG1 AL750014 SNP 67.28 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG1 AL750014 SNP 64.37 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG1 AL750014 SNP 84.53 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 AL750014 SNP 80.92 (cM) Automated name-based View Maps
BX250826 SNP 61.93 Pinus pinaster - INRA_composite_2012 - LG1 BX250826 SNP 67.28 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 BX250826 SNP 80.92 (cM) Automated name-based View Maps

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