CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-G2_G2M_2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG2M
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
EST
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - G2_G2M_2012 [ View Map Set Info ]
Map Name: LG2M
Map Start: 0.00 cM
Map Stop: 151.77 cM
Features by Type:
2 EST
80 SNP
82 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 82.       of 4 | Next
Pinus pinaster - G2_G2M_2012 - LG2M
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
F51TW9002I3A5U SNP 0.00 Pinus pinaster - INRA_composite_2012 - LG2 F51TW9002I3A5U SNP 1.46 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG2 F51TW9002I3A5U SNP 1.69 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG2 F51TW9002I3A5U SNP 1.25 (cM) Automated name-based View Maps
BX255297 SNP 0.00 Pinus pinaster - INRA_composite_2012 - LG2 BX255297 SNP 1.46 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG2 BX255297 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG2 BX255297 SNP 1.69 (cM) Automated name-based View Maps
F51TW9001BCS2D SNP 12.68 Pinus pinaster - INIA_INRA2012 - LG2 F51TW9001BCS2D SNP 17.32 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG2 F51TW9001BCS2D SNP 14.14 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG2 F51TW9001BCS2D SNP 20.60 (cM) Automated name-based View Maps
BX252355 SNP 12.68 Pinus pinaster - INIA_INRA2012 - LG2 BX252355 SNP 14.42 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG2 BX252355 SNP 14.14 (cM) Automated name-based View Maps
AL750269 SNP 12.68 Pinus pinaster - INIA_composite_2012 - LG2 AL750269 SNP 4.37 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG2 AL750269 SNP 14.14 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG2 AL750269 SNP 14.42 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG2 AL750269 SNP 14.45 (cM) Automated name-based View Maps
m191 SNP 13.63 Pinus pinaster - INIA_composite_2012 - LG2 m191 SNP 20.86 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG2 m191 SNP 17.32 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG2 m191 SNP 15.09 (cM) Automated name-based View Maps
F585NNT02GYKMU SNP 21.61 Pinus pinaster - INIA_INRA2012 - LG2 F585NNT02GYKMU SNP 20.20 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG2 F585NNT02GYKMU SNP 22.49 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG2 F585NNT02GYKMU SNP 22.80 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG2 F585NNT02GYKMU SNP 29.27 (cM) Automated name-based View Maps
m595 SNP 22.28 Pinus pinaster - INIA_INRA2012 - LG2 m595 SNP 21.45 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG2 m595 SNP 23.74 (cM) Automated name-based View Maps
AL751077 SNP 22.90 Pinus pinaster - INIA_INRA2012 - LG2 AL751077 SNP 22.07 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG2 AL751077 SNP 28.31 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG2 AL751077 SNP 24.36 (cM) Automated name-based View Maps
m634 SNP 22.97 Pinus pinaster - INRA_composite_2012 - LG2 m634 SNP 24.70 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG2 m634 SNP 25.47 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG2 m634 SNP 22.32 (cM) Automated name-based View Maps
F51TW9001BAPT2 SNP 25.31 Pinus pinaster - INRA_composite_2012 - LG2 F51TW9001BAPT2 SNP 27.04 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG2 F51TW9001BAPT2 SNP 24.66 (cM) Automated name-based View Maps
m875 SNP 26.21 Pinus pinaster - INIA_INRA2012 - LG2 m875 SNP 29.01 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG2 m875 SNP 31.39 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG2 m875 SNP 32.88 (cM) Automated name-based View Maps
m833 SNP 26.25 Pinus pinaster - INIA_INRA2012 - LG2 m833 SNP 29.01 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG2 m833 SNP 31.43 (cM) Automated name-based View Maps
FN695050 SNP 26.45 Pinus pinaster - INIA_INRA2012 - LG2 FN695050 SNP 29.01 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG2 FN695050 SNP 32.51 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG2 FN695050 SNP 31.88 (cM) Automated name-based View Maps
AL750959 SNP 26.45 Pinus pinaster - INRA_composite_2012 - LG2 AL750959 SNP 32.51 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG2 AL750959 SNP 29.01 (cM) Automated name-based View Maps
CT583203 SNP 33.76 Pinus pinaster - INRA_composite_2012 - LG2 CT583203 SNP 39.82 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG2 CT583203 SNP 35.23 (cM) Automated name-based View Maps
F51TW9001BXK1Y SNP 33.76 Pinus pinaster - INIA_INRA2012 - LG2 F51TW9001BXK1Y SNP 36.11 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG2 F51TW9001BXK1Y SNP 43.41 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG2 F51TW9001BXK1Y SNP 48.90 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG2 F51TW9001BXK1Y SNP 40.70 (cM) Automated name-based View Maps
m890 SNP 34.64 Pinus pinaster - INIA_INRA2012 - LG2 m890 SNP 36.11 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG2 m890 SNP 40.70 (cM) Automated name-based View Maps
m891 SNP 36.16 Pinus pinaster - INIA_INRA2012 - LG2 m891 SNP 36.11 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG2 m891 SNP 49.11 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG2 m891 SNP 42.22 (cM) Automated name-based View Maps
F51TW9001BLW1C SNP 41.82 Pinus pinaster - INRA_composite_2012 - LG2 F51TW9001BLW1C SNP 48.81 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG2 F51TW9001BLW1C SNP 47.34 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG2 F51TW9001BLW1C SNP 36.83 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG2 F51TW9001BLW1C SNP 60.17 (cM) Automated name-based View Maps
m373 SNP 41.87 Pinus pinaster - INIA_composite_2012 - LG2 m373 SNP 46.53 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG2 m373 SNP 36.83 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG2 m373 SNP 48.81 (cM) Automated name-based View Maps
BX677613 SNP 44.14 Pinus pinaster - INRA_composite_2012 - LG2 BX677613 SNP 50.20 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG2 BX677613 SNP 36.92 (cM) Automated name-based View Maps
CR393183 SNP 76.24 Pinus pinaster - F2_H12_2012 - LG2 CR393183 SNP 79.73 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG2 CR393183 SNP 50.15 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG2 CR393183 SNP 82.30 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG2 CR393183 SNP 65.39 (cM) Automated name-based View Maps
F51TW9001CJN7Q SNP 78.73 Pinus pinaster - INRA_composite_2012 - LG2 F51TW9001CJN7Q SNP 84.79 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG2 F51TW9001CJN7Q SNP 52.64 (cM) Automated name-based View Maps
BX255140 SNP 81.23 Pinus pinaster - INIA_INRA2012 - LG2 BX255140 SNP 54.05 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG2 BX255140 SNP 78.13 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG2 BX255140 SNP 83.63 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG2 BX255140 SNP 86.20 (cM) Automated name-based View Maps

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