CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-G2_G2M_2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG3M
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
eSSR
EST
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - G2_G2M_2012 [ View Map Set Info ]
Map Name: LG3M
Map Start: 0.00 cM
Map Stop: 133.67 cM
Features by Type:
2 EST
94 SNP
2 eSSR
98 Total

Map Features

Restrict by Map:
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Items 1 to 25 of 98.       of 4 | Next
Pinus pinaster - G2_G2M_2012 - LG3M
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
m375 SNP 0.00 Pinus pinaster - INRA_composite_2012 - LG3 m375 SNP 1.87 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 m375 SNP 3.17 (cM) Automated name-based View Maps
BX250949 SNP 0.59 Pinus pinaster - INIA_composite_2012 - LG3 BX250949 SNP 9.54 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 BX250949 SNP 3.16 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 BX250949 SNP 1.87 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG3 BX250949 SNP 0.12 (cM) Automated name-based View Maps
m376 SNP 0.73 Pinus pinaster - INRA_composite_2012 - LG3 m376 SNP 4.49 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 m376 SNP 5.79 (cM) Automated name-based View Maps
m585 SNP 1.72 Pinus pinaster - INRA_composite_2012 - LG3 m585 SNP 5.48 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 m585 SNP 6.78 (cM) Automated name-based View Maps
m73 SNP 2.08 Pinus pinaster - INIA_INRA2012 - LG3 m73 SNP 7.14 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 m73 SNP 5.84 (cM) Automated name-based View Maps
F51TW9001BZVCF SNP 6.43 Pinus pinaster - INIA_INRA2012 - LG3 F51TW9001BZVCF SNP 11.49 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 F51TW9001BZVCF SNP 10.19 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG3 F51TW9001BZVCF SNP 21.82 (cM) Automated name-based View Maps
F51TW9001A1NYW SNP 7.67 Pinus pinaster - INRA_composite_2012 - LG3 F51TW9001A1NYW SNP 11.43 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 F51TW9001A1NYW SNP 12.73 (cM) Automated name-based View Maps
BX254824 SNP 8.79 Pinus pinaster - INIA_INRA2012 - LG3 BX254824 SNP 16.73 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 BX254824 SNP 12.55 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG3 BX254824 SNP 23.79 (cM) Automated name-based View Maps
BX252758 SNP 16.36 Pinus pinaster - INIA_INRA2012 - LG3 BX252758 SNP 24.49 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG3 BX252758 SNP 20.02 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 BX252758 SNP 20.12 (cM) Automated name-based View Maps
BX250285 SNP 16.36 Pinus pinaster - INRA_composite_2012 - LG3 BX250285 SNP 20.12 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 BX250285 SNP 24.49 (cM) Automated name-based View Maps
estPtTX_p14A9 EST 28.22 Pinus pinaster - INIA_INRA2012 - LG3 estPtTX_p14A9 EST 38.43 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 estPtTX_p14A9 EST 31.97 (cM) Automated name-based View Maps
CT575881 SNP 31.02 Pinus pinaster - INIA_INRA2012 - LG3 CT575881 SNP 38.63 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG3 CT575881 SNP 40.09 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 CT575881 SNP 34.78 (cM) Automated name-based View Maps
m692 SNP 33.43 Pinus pinaster - INIA_composite_2012 - LG3 m692 SNP 48.68 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 m692 SNP 45.36 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG3 m692 SNP 42.65 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 m692 SNP 38.16 (cM) Automated name-based View Maps
F51TW9001AMHCH SNP 33.52 Pinus pinaster - INRA_composite_2012 - LG3 F51TW9001AMHCH SNP 38.16 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG3 F51TW9001AMHCH SNP 40.86 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG3 F51TW9001AMHCH SNP 48.56 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 F51TW9001AMHCH SNP 45.36 (cM) Automated name-based View Maps
BX249337 SNP 37.22 Pinus pinaster - INIA_INRA2012 - LG3 BX249337 SNP 51.68 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 BX249337 SNP 45.21 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG3 BX249337 SNP 48.34 (cM) Automated name-based View Maps
BX251919 SNP 37.22 Pinus pinaster - INIA_INRA2012 - LG3 BX251919 SNP 47.45 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 BX251919 SNP 40.98 (cM) Automated name-based View Maps
m707 SNP 37.32 Pinus pinaster - INIA_INRA2012 - LG3 m707 SNP 52.79 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 m707 SNP 46.32 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG3 m707 SNP 49.43 (cM) Automated name-based View Maps
BX254031 SNP 44.89 Pinus pinaster - F2_H12_2012 - LG3 BX254031 SNP 51.31 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG3 BX254031 SNP 60.80 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 BX254031 SNP 55.92 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 BX254031 SNP 48.65 (cM) Automated name-based View Maps
estPtNCS_4CH1 EST 65.72 Pinus pinaster - INIA_INRA2012 - LG3 estPtNCS_4CH1 EST 74.03 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 estPtNCS_4CH1 EST 67.92 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG3F estPtNCS_4CH1 (0/21) EST 57.27 (cM) Automated name-based View Maps
BX254969 SNP 68.89 Pinus pinaster - INRA_composite_2012 - LG3 BX254969 SNP 67.92 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 BX254969 SNP 74.03 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG3F BX254969 SNP 61.97 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG3 BX254969 SNP 73.91 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG3 BX254969 SNP 70.60 (cM) Automated name-based View Maps
BX253243 SNP 68.89 Pinus pinaster - INRA_composite_2012 - LG3 BX253243 SNP 67.92 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG3 BX253243 SNP 71.94 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 BX253243 SNP 74.03 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG3 BX253243 SNP 70.60 (cM) Automated name-based View Maps
F51TW9002F94SZ SNP 71.38 Pinus pinaster - INRA_composite_2012 - LG3 F51TW9002F94SZ SNP 71.43 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 F51TW9002F94SZ SNP 79.51 (cM) Automated name-based View Maps
BX251004 SNP 73.77 Pinus pinaster - INIA_INRA2012 - LG3 BX251004 SNP 81.90 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 BX251004 SNP 73.82 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG3 BX251004 SNP 81.64 (cM) Automated name-based View Maps
F51TW9001AEN0U SNP 73.77 Pinus pinaster - INRA_composite_2012 - LG3 F51TW9001AEN0U SNP 73.82 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 F51TW9001AEN0U SNP 81.90 (cM) Automated name-based View Maps
BX682372 SNP 74.97 Pinus pinaster - F2_H12_2012 - LG3 BX682372 SNP 83.16 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG3 BX682372 SNP 83.02 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG3 BX682372 SNP 74.94 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG3 BX682372 SNP 85.02 (cM) Automated name-based View Maps

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