CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-G2_G2M_2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG5M
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
eSSR
EST
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - G2_G2M_2012 [ View Map Set Info ]
Map Name: LG5M
Map Start: 0.00 cM
Map Stop: 126.97 cM
Features by Type:
5 EST
95 SNP
1 eSSR
101 Total

Map Features

Restrict by Map:
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[ Download Feature Correspondence Data ]
Items 1 to 25 of 101.       of 5 | Next
Pinus pinaster - G2_G2M_2012 - LG5M
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
BX253242 SNP 0.00 Pinus pinaster - INIA_INRA2012 - LG5 BX253242 SNP 5.68 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG5 BX253242 SNP 2.37 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 BX253242 SNP 3.17 (cM) Automated name-based View Maps
BX253183 SNP 0.00 Pinus pinaster - INRA_composite_2012 - LG5 BX253183 SNP 13.25 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 BX253183 SNP 15.76 (cM) Automated name-based View Maps
GW575374 SNP 6.62 Pinus pinaster - INIA_INRA2012 - LG5 GW575374 SNP 25.79 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 GW575374 SNP 19.87 (cM) Automated name-based View Maps
ssr_RPtEST11 eSSR 7.96 Pinus pinaster - INRA_composite_2012 - LG5 ssr_RPtEST11 eSSR 28.66 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 ssr_RPtEST11 eSSR 27.64 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG5F ssr_RPtEST11 eSSR 49.35 (cM) Automated name-based View Maps
F51TW9002F8N88 SNP 9.27 Pinus pinaster - INIA_composite_2012 - LG5 F51TW9002F8N88 SNP 25.40 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 F51TW9002F8N88 SNP 25.79 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 F51TW9002F8N88 SNP 28.66 (cM) Automated name-based View Maps
F51TW9001DHWFJ SNP 9.29 Pinus pinaster - INIA_composite_2012 - LG5 F51TW9001DHWFJ SNP 25.43 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 F51TW9001DHWFJ SNP 28.66 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 F51TW9001DHWFJ SNP 25.79 (cM) Automated name-based View Maps
F51TW9001A3ECR SNP 9.29 Pinus pinaster - INIA_composite_2012 - LG5 F51TW9001A3ECR SNP 33.09 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 F51TW9001A3ECR SNP 28.66 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 F51TW9001A3ECR SNP 26.78 (cM) Automated name-based View Maps
m878 SNP 10.27 Pinus pinaster - INIA_INRA2012 - LG5 m878 SNP 26.78 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 m878 SNP 28.66 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG5 m878 SNP 47.77 (cM) Automated name-based View Maps
m257 SNP 10.27 Pinus pinaster - INRA_composite_2012 - LG5 m257 SNP 28.66 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 m257 SNP 27.64 (cM) Automated name-based View Maps
AL750173 SNP 10.32 Pinus pinaster - INIA_INRA2012 - LG5 AL750173 SNP 25.79 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG5 AL750173 SNP 41.69 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 AL750173 SNP 28.66 (cM) Automated name-based View Maps
F51TW9001BR87X SNP 10.32 Pinus pinaster - INIA_INRA2012 - LG5 F51TW9001BR87X SNP 27.64 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 F51TW9001BR87X SNP 28.66 (cM) Automated name-based View Maps
CT576406 SNP 10.32 Pinus pinaster - INIA_INRA2012 - LG5 CT576406 SNP 27.64 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG5 CT576406 SNP 37.08 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 CT576406 SNP 28.66 (cM) Automated name-based View Maps
BX249551 SNP 10.32 Pinus pinaster - INIA_composite_2012 - LG5 BX249551 SNP 56.18 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 BX249551 SNP 28.66 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG5 BX249551 SNP 37.08 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 BX249551 SNP 27.64 (cM) Automated name-based View Maps
F7JJN6E01B7BCW SNP 10.32 Pinus pinaster - INIA_composite_2012 - LG5 F7JJN6E01B7BCW SNP 36.08 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 F7JJN6E01B7BCW SNP 25.79 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 F7JJN6E01B7BCW SNP 28.66 (cM) Automated name-based View Maps
CR392306 SNP 10.32 Pinus pinaster - INIA_INRA2012 - LG5 CR392306 SNP 27.64 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 CR392306 SNP 28.66 (cM) Automated name-based View Maps
m879 SNP 10.34 Pinus pinaster - INRA_composite_2012 - LG5 m879 SNP 28.66 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 m879 SNP 27.64 (cM) Automated name-based View Maps
m204 SNP 10.87 Pinus pinaster - INRA_composite_2012 - LG5 m204 SNP 23.28 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 m204 SNP 25.79 (cM) Automated name-based View Maps
estPtNCS_PtaAGP6 EST 10.93 Pinus pinaster - G2_G2F_2012 - LG5F estPtNCS_PtaAGP6 EST 18.04 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 estPtNCS_PtaAGP6 EST 25.79 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 estPtNCS_PtaAGP6 EST 23.28 (cM) Automated name-based View Maps
BX249988 SNP 13.30 Pinus pinaster - INRA_composite_2012 - LG5 BX249988 SNP 25.71 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG5 BX249988 SNP 7.69 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 BX249988 SNP 25.79 (cM) Automated name-based View Maps
m189 SNP 13.39 Pinus pinaster - INIA_INRA2012 - LG5 m189 SNP 25.79 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 m189 SNP 25.80 (cM) Automated name-based View Maps
BX254686 SNP 19.01 Pinus pinaster - INIA_composite_2012 - LG5 BX254686 SNP 59.47 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 BX254686 SNP 31.42 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 BX254686 SNP 32.95 (cM) Automated name-based View Maps
BX677167 SNP 19.01 Pinus pinaster - INRA_composite_2012 - LG5 BX677167 SNP 31.42 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 BX677167 SNP 32.95 (cM) Automated name-based View Maps
BX254986 SNP 30.40 Pinus pinaster - INIA_INRA2012 - LG5 BX254986 SNP 40.42 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 BX254986 SNP 42.81 (cM) Automated name-based View Maps
m336 SNP 33.04 Pinus pinaster - INRA_composite_2012 - LG5 m336 SNP 45.78 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 m336 SNP 46.59 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG5 m336 SNP 57.10 (cM) Automated name-based View Maps
BX680977 SNP 33.37 Pinus pinaster - INIA_composite_2012 - LG5 BX680977 SNP 62.44 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 BX680977 SNP 40.74 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG5 BX680977 SNP 54.94 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 BX680977 SNP 45.78 (cM) Automated name-based View Maps

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