CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-G2_G2M_2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG6M
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
eSSR
EST
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - G2_G2M_2012 [ View Map Set Info ]
Map Name: LG6M
Map Start: 0.00 cM
Map Stop: 114.56 cM
Features by Type:
2 EST
93 SNP
1 eSSR
96 Total

Map Features

Restrict by Map:
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Items 1 to 25 of 96.       of 4 | Next
Pinus pinaster - G2_G2M_2012 - LG6M
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
AL750161 SNP 0.00 Pinus pinaster - INIA_INRA2012 - LG6 AL750161 SNP 1.46 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 AL750161 SNP 0.67 (cM) Automated name-based View Maps
F51TW9001BEZX4 SNP 0.00 Pinus pinaster - INIA_INRA2012 - LG6 F51TW9001BEZX4 SNP 1.50 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 F51TW9001BEZX4 SNP 0.67 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG6 F51TW9001BEZX4 SNP 15.75 (cM) Automated name-based View Maps
F51TW9001AV518 SNP 0.00 Pinus pinaster - INRA_composite_2012 - LG6 F51TW9001AV518 SNP 0.67 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 F51TW9001AV518 SNP 1.46 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG6 F51TW9001AV518 SNP 0.67 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG6 F51TW9001AV518 SNP 12.99 (cM) Automated name-based View Maps
m333 SNP 0.69 Pinus pinaster - INIA_INRA2012 - LG6 m333 SNP 1.46 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 m333 SNP 0.67 (cM) Automated name-based View Maps
F51TW9002FN4GR SNP 1.12 Pinus pinaster - INRA_composite_2012 - LG6 F51TW9002FN4GR SNP 0.67 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG6 F51TW9002FN4GR SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 F51TW9002FN4GR SNP 1.46 (cM) Automated name-based View Maps
BX252510 SNP 1.12 Pinus pinaster - INIA_INRA2012 - LG6 BX252510 SNP 1.45 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG6 BX252510 SNP 9.29 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 BX252510 SNP 0.67 (cM) Automated name-based View Maps
CT578910 SNP 1.12 Pinus pinaster - INRA_composite_2012 - LG6 CT578910 SNP 0.67 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 CT578910 SNP 1.46 (cM) Automated name-based View Maps
BX681024 SNP 2.37 Pinus pinaster - INRA_composite_2012 - LG6 BX681024 SNP 1.92 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG6 BX681024 SNP 18.55 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 BX681024 SNP 10.71 (cM) Automated name-based View Maps
F51TW9001A46L3 SNP 2.37 Pinus pinaster - INIA_INRA2012 - LG6 F51TW9001A46L3 SNP 10.71 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 F51TW9001A46L3 SNP 1.92 (cM) Automated name-based View Maps
ssrPp_cn524 eSSR 8.85 Pinus pinaster - G2_G2F_2012 - LG6F ssrPp_cn524 eSSR 11.20 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 ssrPp_cn524 eSSR 18.67 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 ssrPp_cn524 eSSR 8.40 (cM) Automated name-based View Maps
F51TW9001B4T2Q SNP 9.93 Pinus pinaster - INRA_composite_2012 - LG6 F51TW9001B4T2Q SNP 8.40 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 F51TW9001B4T2Q SNP 18.62 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG6 F51TW9001B4T2Q SNP 18.72 (cM) Automated name-based View Maps
CT575910 SNP 9.93 Pinus pinaster - F2_H12_2012 - LG6 CT575910 SNP 10.64 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 CT575910 SNP 8.40 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG6 CT575910 SNP 27.77 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 CT575910 SNP 20.17 (cM) Automated name-based View Maps
384_CCoAomt1 SNP 11.13 Pinus pinaster - F2_H12_2012 - LG6 384_CCoAomt1 SNP 10.19 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 384_CCoAomt1 SNP 8.40 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG6 384_CCoAomt1 SNP 16.08 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 384_CCoAomt1 SNP 18.67 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG6F 384_CCoAomt1 SNP 4.03 (cM) Automated name-based View Maps
m151 SNP 11.18 Pinus pinaster - INRA_composite_2012 - LG6 m151 SNP 9.58 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 m151 SNP 20.17 (cM) Automated name-based View Maps
PtNCS_CCoAOMT EST 12.64 No other positions
BX249094 SNP 13.55 Pinus pinaster - INIA_INRA2012 - LG6 BX249094 SNP 20.17 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 BX249094 SNP 11.26 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG6 BX249094 SNP 18.72 (cM) Automated name-based View Maps
BX255383 SNP 15.98 Pinus pinaster - F2_H12_2012 - LG6 BX255383 SNP 17.76 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 BX255383 SNP 22.82 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG6 BX255383 SNP 24.66 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 BX255383 SNP 14.38 (cM) Automated name-based View Maps
F51TW9001CHEL9 SNP 15.98 Pinus pinaster - INRA_composite_2012 - LG6 F51TW9001CHEL9 SNP 13.69 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 F51TW9001CHEL9 SNP 22.13 (cM) Automated name-based View Maps
BX253259 SNP 15.98 Pinus pinaster - INIA_INRA2012 - LG6 BX253259 SNP 22.13 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 BX253259 SNP 13.69 (cM) Automated name-based View Maps
BX251340 SNP 19.71 Pinus pinaster - INIA_INRA2012 - LG6 BX251340 SNP 25.08 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 BX251340 SNP 17.42 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG6 BX251340 SNP 26.61 (cM) Automated name-based View Maps
CT575388 SNP 27.73 Pinus pinaster - G2_G2F_2012 - LG6F CT575388 SNP 23.20 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 CT575388 SNP 25.44 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 CT575388 SNP 20.57 (cM) Automated name-based View Maps
BX250237 SNP 54.00 Pinus pinaster - INRA_composite_2012 - LG6 BX250237 SNP 47.39 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG6 BX250237 SNP 49.33 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 BX250237 SNP 50.24 (cM) Automated name-based View Maps
F51TW9001B9YRV SNP 56.57 Pinus pinaster - INIA_composite_2012 - LG6 F51TW9001B9YRV SNP 56.08 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 F51TW9001B9YRV SNP 51.44 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 F51TW9001B9YRV SNP 49.57 (cM) Automated name-based View Maps
FN706414 SNP 56.57 Pinus pinaster - INIA_INRA2012 - LG6 FN706414 SNP 51.44 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 FN706414 SNP 49.57 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG6 FN706414 SNP 51.51 (cM) Automated name-based View Maps
F51TW9001CXU1D SNP 65.34 Pinus pinaster - INIA_composite_2012 - LG6 F51TW9001CXU1D SNP 66.23 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG6 F51TW9001CXU1D SNP 58.80 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 F51TW9001CXU1D SNP 54.37 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 F51TW9001CXU1D SNP 57.73 (cM) Automated name-based View Maps

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