CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-G2_G2M_2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG8M
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - G2_G2M_2012 [ View Map Set Info ]
Map Name: LG8M
Map Start: 0.00 cM
Map Stop: 119.41 cM
Features by Type:
94 SNP
94 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 94.       of 4 | Next
Pinus pinaster - G2_G2M_2012 - LG8M
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
BX249608 SNP 0.00 Pinus pinaster - INIA_composite_2012 - LG8 BX249608 SNP 5.92 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 BX249608 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 BX249608 SNP 0.00 (cM) Automated name-based View Maps
F51TW9001CTLDD SNP 0.06 Pinus pinaster - INIA_INRA2012 - LG8 F51TW9001CTLDD SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 F51TW9001CTLDD SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG8_1 F51TW9001CTLDD SNP 0.00 (cM) Automated name-based View Maps
F51TW9001AE2WV SNP 0.06 Pinus pinaster - INIA_INRA2012 - LG8 F51TW9001AE2WV SNP 1.52 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 F51TW9001AE2WV SNP 1.52 (cM) Automated name-based View Maps
BX678723 SNP 0.06 Pinus pinaster - INIA_composite_2012 - LG8 BX678723 SNP 5.85 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 BX678723 SNP 1.52 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 BX678723 SNP 1.52 (cM) Automated name-based View Maps
F51TW9001CPV5N SNP 2.41 Pinus pinaster - INIA_INRA2012 - LG8 F51TW9001CPV5N SNP 3.87 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 F51TW9001CPV5N SNP 3.87 (cM) Automated name-based View Maps
COS_BX784129 SNP 3.62 Pinus pinaster - INRA_composite_2012 - LG8 COS_BX784129 SNP 5.08 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 COS_BX784129 SNP 5.85 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG8 COS_BX784129 SNP 12.78 (cM) Automated name-based View Maps
CT580767 SNP 3.62 Pinus pinaster - INIA_INRA2012 - LG8 CT580767 SNP 5.85 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 CT580767 SNP 5.08 (cM) Automated name-based View Maps
AL750825 SNP 7.27 Pinus pinaster - F2_H12_2012 - LG8_1 AL750825 SNP 10.75 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 AL750825 SNP 6.56 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 AL750825 SNP 10.80 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG8F AL750825 SNP 1.41 (cM) Automated name-based View Maps
BX681679 SNP 13.48 Pinus pinaster - INRA_composite_2012 - LG8 BX681679 SNP 14.94 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 BX681679 SNP 19.97 (cM) Automated name-based View Maps
CT578868 SNP 21.82 Pinus pinaster - INIA_INRA2012 - LG8 CT578868 SNP 28.17 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG8 CT578868 SNP 32.17 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG8_1 CT578868 SNP 28.32 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 CT578868 SNP 25.33 (cM) Automated name-based View Maps
F51TW9002J4AQY SNP 21.82 Pinus pinaster - INIA_INRA2012 - LG8 F51TW9002J4AQY SNP 26.43 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 F51TW9002J4AQY SNP 23.28 (cM) Automated name-based View Maps
F51TW9001A0TXI SNP 28.26 Pinus pinaster - INIA_composite_2012 - LG8 F51TW9001A0TXI SNP 32.17 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 F51TW9001A0TXI SNP 29.72 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG8_1 F51TW9001A0TXI SNP 30.38 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 F51TW9001A0TXI SNP 28.17 (cM) Automated name-based View Maps
F51TW9001DHJG8 SNP 51.63 Pinus pinaster - INIA_composite_2012 - LG8 F51TW9001DHJG8 SNP 45.26 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 F51TW9001DHJG8 SNP 51.54 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 F51TW9001DHJG8 SNP 53.09 (cM) Automated name-based View Maps
BX248867 SNP 61.59 Pinus pinaster - INIA_composite_2012 - LG8 BX248867 SNP 54.60 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 BX248867 SNP 58.12 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG8_2 BX248867 SNP 9.17 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 BX248867 SNP 59.67 (cM) Automated name-based View Maps
BX253714 SNP 61.59 Pinus pinaster - INIA_INRA2012 - LG8 BX253714 SNP 58.12 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG8 BX253714 SNP 53.11 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 BX253714 SNP 59.67 (cM) Automated name-based View Maps
BX679170 SNP 62.79 Pinus pinaster - F2_H12_2012 - LG8_2 BX679170 SNP 9.17 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 BX679170 SNP 58.12 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 BX679170 SNP 59.67 (cM) Automated name-based View Maps
F51TW9002G7LOJ SNP 63.99 Pinus pinaster - INIA_INRA2012 - LG8 F51TW9002G7LOJ SNP 63.90 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG8 F51TW9002G7LOJ SNP 77.76 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 F51TW9002G7LOJ SNP 65.45 (cM) Automated name-based View Maps
F51TW9001A4TO7 SNP 63.99 Pinus pinaster - INRA_composite_2012 - LG8 F51TW9001A4TO7 SNP 65.45 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 F51TW9001A4TO7 SNP 63.90 (cM) Automated name-based View Maps
BX253327 SNP 63.99 Pinus pinaster - INRA_composite_2012 - LG8 BX253327 SNP 65.45 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 BX253327 SNP 63.90 (cM) Automated name-based View Maps
FN695400 SNP 63.99 Pinus pinaster - INIA_INRA2012 - LG8 FN695400 SNP 63.90 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 FN695400 SNP 65.45 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG8 FN695400 SNP 54.60 (cM) Automated name-based View Maps
CT577574 SNP 63.99 Pinus pinaster - INRA_composite_2012 - LG8 CT577574 SNP 65.45 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG8 CT577574 SNP 82.99 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 CT577574 SNP 65.11 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG8_2 CT577574 SNP 24.34 (cM) Automated name-based View Maps
BX250849 SNP 63.99 Pinus pinaster - INIA_composite_2012 - LG8 BX250849 SNP 68.51 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 BX250849 SNP 63.90 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 BX250849 SNP 65.45 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG8_2 BX250849 SNP 18.56 (cM) Automated name-based View Maps
AL750537 SNP 63.99 Pinus pinaster - INIA_composite_2012 - LG8 AL750537 SNP 82.88 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 AL750537 SNP 65.45 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 AL750537 SNP 65.11 (cM) Automated name-based View Maps
AL750495 SNP 63.99 Pinus pinaster - INIA_INRA2012 - LG8 AL750495 SNP 63.90 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG10F AL750495 SNP 67.09 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG10 AL750495 SNP 68.75 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG10 AL750495 SNP 71.64 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 AL750495 SNP 65.45 (cM) Automated name-based View Maps
AL751176 SNP 63.99 Pinus pinaster - INRA_composite_2012 - LG8 AL751176 SNP 65.45 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 AL751176 SNP 65.11 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG8 AL751176 SNP 81.63 (cM) Automated name-based View Maps

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