CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-G2_G2M_2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG9M
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
EST
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - G2_G2M_2012 [ View Map Set Info ]
Map Name: LG9M
Map Start: 0.00 cM
Map Stop: 106.39 cM
Features by Type:
2 EST
102 SNP
104 Total

Map Features

Restrict by Map:
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Items 1 to 25 of 104.       of 5 | Next
Pinus pinaster - G2_G2M_2012 - LG9M
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
F5V9AAZ01AKB51 SNP 0.00 Pinus pinaster - INRA_composite_2012 - LG9 F5V9AAZ01AKB51 SNP 3.49 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG9 F5V9AAZ01AKB51 SNP 7.43 (cM) Automated name-based View Maps
BX249461 SNP 1.24 Pinus pinaster - INIA_INRA2012 - LG9 BX249461 SNP 5.34 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG9 BX249461 SNP 1.75 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG9 BX249461 SNP 4.40 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG9 BX249461 SNP 3.49 (cM) Automated name-based View Maps
BX250210 SNP 6.22 Pinus pinaster - INRA_composite_2012 - LG9 BX250210 SNP 9.71 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG9 BX250210 SNP 7.43 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG9 BX250210 SNP 9.22 (cM) Automated name-based View Maps
F51TW9001A7LAX SNP 8.72 Pinus pinaster - INRA_composite_2012 - LG9 F51TW9001A7LAX SNP 12.21 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG9 F51TW9001A7LAX SNP 13.55 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG9 F51TW9001A7LAX SNP 14.65 (cM) Automated name-based View Maps
F51TW9001DWSQP SNP 12.51 Pinus pinaster - INIA_composite_2012 - LG9 F51TW9001DWSQP SNP 14.65 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG9 F51TW9001DWSQP SNP 14.05 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG9 F51TW9001DWSQP SNP 13.94 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG9 F51TW9001DWSQP SNP 15.06 (cM) Automated name-based View Maps
BX680617 SNP 16.27 Pinus pinaster - INIA_INRA2012 - LG9 BX680617 SNP 16.40 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG9 BX680617 SNP 19.76 (cM) Automated name-based View Maps
BX677764 SNP 17.53 Pinus pinaster - INIA_INRA2012 - LG9 BX677764 SNP 17.17 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG9 BX677764 SNP 21.02 (cM) Automated name-based View Maps
BX254583 SNP 25.20 Pinus pinaster - INIA_INRA2012 - LG9 BX254583 SNP 21.82 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG9 BX254583 SNP 28.69 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG9 BX254583 SNP 22.35 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG9 BX254583 SNP 28.93 (cM) Automated name-based View Maps
CT579310 SNP 25.20 Pinus pinaster - INIA_composite_2012 - LG9 CT579310 SNP 22.51 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG9 CT579310 SNP 29.41 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG9 CT579310 SNP 23.39 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG9 CT579310 SNP 28.69 (cM) Automated name-based View Maps
CT578959 SNP 25.20 Pinus pinaster - INIA_INRA2012 - LG9 CT578959 SNP 24.84 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG9 CT578959 SNP 28.69 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG9 CT578959 SNP 28.93 (cM) Automated name-based View Maps
BX678296 SNP 34.01 Pinus pinaster - INRA_composite_2012 - LG9 BX678296 SNP 34.68 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG9 BX678296 SNP 33.43 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG9 BX678296 SNP 32.31 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG9 BX678296 SNP 31.78 (cM) Automated name-based View Maps
BX679533 SNP 34.01 Pinus pinaster - INRA_composite_2012 - LG9 BX679533 SNP 37.50 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG9 BX679533 SNP 32.52 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG9 BX679533 SNP 33.43 (cM) Automated name-based View Maps
BX251119 SNP 35.32 Pinus pinaster - INIA_INRA2012 - LG9 BX251119 SNP 33.83 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG9 BX251119 SNP 38.81 (cM) Automated name-based View Maps
F51TW9001CITAA SNP 36.59 Pinus pinaster - INIA_INRA2012 - LG9 F51TW9001CITAA SNP 33.83 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG9 F51TW9001CITAA SNP 37.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG9 F51TW9001CITAA SNP 32.77 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG9 F51TW9001CITAA SNP 38.81 (cM) Automated name-based View Maps
F51TW9001AXRJP SNP 41.53 Pinus pinaster - INIA_INRA2012 - LG9 F51TW9001AXRJP SNP 40.27 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG9 F51TW9001AXRJP SNP 45.02 (cM) Automated name-based View Maps
BX679022 SNP 41.53 Pinus pinaster - INRA_composite_2012 - LG9 BX679022 SNP 45.02 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG9 BX679022 SNP 40.27 (cM) Automated name-based View Maps
m966 SNP 46.50 Pinus pinaster - F2_H12_2012 - LG9 m966 SNP 62.64 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG9 m966 SNP 51.59 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG9 m966 SNP 46.64 (cM) Automated name-based View Maps
m968 SNP 48.11 Pinus pinaster - INIA_INRA2012 - LG9 m968 SNP 46.64 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG9 m968 SNP 51.59 (cM) Automated name-based View Maps
F51TW9001ANW8D SNP 48.72 Pinus pinaster - INIA_composite_2012 - LG9 F51TW9001ANW8D SNP 50.68 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG9 F51TW9001ANW8D SNP 52.21 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG9 F51TW9001ANW8D SNP 47.72 (cM) Automated name-based View Maps
AL749652 SNP 48.72 Pinus pinaster - INRA_composite_2012 - LG9 AL749652 SNP 53.46 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG9 AL749652 SNP 47.33 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG9 AL749652 SNP 47.78 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG9 AL749652 SNP 65.65 (cM) Automated name-based View Maps
BX666057 SNP 48.72 Pinus pinaster - INIA_INRA2012 - LG9 BX666057 SNP 47.71 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG9 BX666057 SNP 52.21 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG9 BX666057 SNP 50.33 (cM) Automated name-based View Maps
AL750418 SNP 57.29 Pinus pinaster - INIA_INRA2012 - LG9 AL750418 SNP 54.29 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG9 AL750418 SNP 71.97 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG9 AL750418 SNP 60.53 (cM) Automated name-based View Maps
CT579728 SNP 57.29 Pinus pinaster - INIA_INRA2012 - LG9 CT579728 SNP 54.29 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG9 CT579728 SNP 60.53 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG9 CT579728 SNP 71.97 (cM) Automated name-based View Maps
FN695045 SNP 57.29 Pinus pinaster - INRA_composite_2012 - LG9 FN695045 SNP 60.53 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG9 FN695045 SNP 53.94 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG9 FN695045 SNP 71.97 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG9 FN695045 SNP 52.95 (cM) Automated name-based View Maps
F51TW9001APF65 SNP 62.30 Pinus pinaster - F2_H12_2012 - LG9 F51TW9001APF65 SNP 75.96 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG9 F51TW9001APF65 SNP 64.52 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG9 F51TW9001APF65 SNP 57.35 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG9 F51TW9001APF65 SNP 55.95 (cM) Automated name-based View Maps

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