CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-G2_G2M_2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG9M
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
EST
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - G2_G2M_2012 [ View Map Set Info ]
Map Name: LG9M
Map Start: 0.00 cM
Map Stop: 106.39 cM
Features by Type:
2 EST
102 SNP
104 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 8 of 8.
Pinus pinaster - G2_G2M_2012 - LG9M
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
F5V9AAZ01AKB51 SNP 0.00 Pinus pinaster - INIA_INRA2012 - LG9 F5V9AAZ01AKB51 SNP 7.43 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG9 F5V9AAZ01AKB51 SNP 3.49 (cM) Automated name-based View Maps
BX255474 (2.5/10) SNP 0.00 Pinus pinaster - F2_H12_2012 - LG9 BX255474 SNP 1.75 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG9F BX255474 (2.5/10) SNP 0.00 (cM) Automated name-based View Maps
m269 (0/8) SNP 0.00 Pinus pinaster - F2_H12_2012 - LG9 m269 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG9F m269 (0/8) SNP 0.00 (cM) Automated name-based View Maps
F51TW9001CC8PS (0/12) SNP 0.00 Pinus pinaster - G2_G2F_2012 - LG9F F51TW9001CC8PS (0/12) SNP 0.00 (cM) Automated name-based View Maps
CT576158 (0/12) SNP 0.00 Pinus pinaster - G2_G2F_2012 - LG9F CT576158 (0/12) SNP 0.00 (cM) Automated name-based View Maps
BX252611 (0/11) SNP 0.00 Pinus pinaster - G2_G2F_2012 - LG9F BX252611 (0/11) SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG9 BX252611 SNP 0.94 (cM) Automated name-based View Maps
BX249255 (0/11) SNP 0.00 Pinus pinaster - G2_G2F_2012 - LG9F BX249255 (0/11) SNP 0.00 (cM) Automated name-based View Maps
AL750449 (0/11) SNP 0.00 Pinus pinaster - G2_G2F_2012 - LG9F AL750449 (0/11) SNP 0.00 (cM) Automated name-based View Maps

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