CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-G2_G2M_2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG10M
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
eSSR
EST
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - G2_G2M_2012 [ View Map Set Info ]
Map Name: LG10M
Map Start: 0.00 cM
Map Stop: 121.37 cM
Features by Type:
2 EST
91 SNP
2 eSSR
95 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 95.       of 4 | Next
Pinus pinaster - G2_G2M_2012 - LG10M
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
m450 SNP 0.00 Pinus pinaster - INIA_INRA2012 - LG10 m450 SNP 0.14 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG10 m450 SNP 0.14 (cM) Automated name-based View Maps
BX676885 SNP 8.80 Pinus pinaster - INRA_composite_2012 - LG10 BX676885 SNP 8.94 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG10 BX676885 SNP 9.37 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG10 BX676885 SNP 11.76 (cM) Automated name-based View Maps
F51TW9001BKZIN SNP 8.80 Pinus pinaster - F2_H12_2012 - LG10 F51TW9001BKZIN SNP 3.90 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG10 F51TW9001BKZIN SNP 4.24 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG10 F51TW9001BKZIN SNP 4.24 (cM) Automated name-based View Maps
FN256445 SNP 8.80 Pinus pinaster - INIA_INRA2012 - LG10 FN256445 SNP 4.24 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG10 FN256445 SNP 4.24 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG10 FN256445 SNP 3.90 (cM) Automated name-based View Maps
F51TW9001B9TZM SNP 8.80 Pinus pinaster - F2_H12_2012 - LG10 F51TW9001B9TZM SNP 3.90 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG10 F51TW9001B9TZM SNP 4.24 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG10 F51TW9001B9TZM SNP 4.24 (cM) Automated name-based View Maps
F51TW9001DBUN7 SNP 8.80 Pinus pinaster - INRA_composite_2012 - LG10 F51TW9001DBUN7 SNP 8.94 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG10 F51TW9001DBUN7 SNP 8.94 (cM) Automated name-based View Maps
BX681924 SNP 8.80 Pinus pinaster - INIA_INRA2012 - LG10 BX681924 SNP 8.94 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG10 BX681924 SNP 8.94 (cM) Automated name-based View Maps
BX251991 SNP 8.80 Pinus pinaster - INRA_composite_2012 - LG10 BX251991 SNP 8.94 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG10 BX251991 SNP 8.94 (cM) Automated name-based View Maps
m110 SNP 10.06 Pinus pinaster - INIA_INRA2012 - LG10 m110 SNP 9.62 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG10 m110 SNP 11.98 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG10 m110 SNP 10.20 (cM) Automated name-based View Maps
BX784194 SNP 12.48 Pinus pinaster - INRA_composite_2012 - LG10 BX784194 SNP 12.62 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG10 BX784194 SNP 13.89 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG10 BX784194 SNP 12.62 (cM) Automated name-based View Maps
F51TW9001AUTFF SNP 19.97 Pinus pinaster - INIA_INRA2012 - LG10 F51TW9001AUTFF SNP 15.79 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG10 F51TW9001AUTFF SNP 20.11 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG10 F51TW9001AUTFF SNP 24.61 (cM) Automated name-based View Maps
F51TW9001APC7V SNP 22.50 Pinus pinaster - INRA_composite_2012 - LG10 F51TW9001APC7V SNP 22.64 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG10 F51TW9001APC7V SNP 18.32 (cM) Automated name-based View Maps
FN695503 SNP 25.00 Pinus pinaster - INIA_composite_2012 - LG10 FN695503 SNP 26.24 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG10 FN695503 SNP 24.97 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG10 FN695503 SNP 25.14 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG10 FN695503 SNP 33.38 (cM) Automated name-based View Maps
BX255344 SNP 25.00 Pinus pinaster - INRA_composite_2012 - LG10 BX255344 SNP 25.14 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG10 BX255344 SNP 31.74 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG10 BX255344 SNP 24.97 (cM) Automated name-based View Maps
AL750473 SNP 25.00 Pinus pinaster - INRA_composite_2012 - LG10 AL750473 SNP 22.64 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG10 AL750473 SNP 18.32 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG10 AL750473 SNP 19.21 (cM) Automated name-based View Maps
BX250439 SNP 36.75 Pinus pinaster - INRA_composite_2012 - LG10 BX250439 SNP 33.39 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG10 BX250439 SNP 33.11 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG10 BX250439 SNP 39.99 (cM) Automated name-based View Maps
m315 SNP 44.73 Pinus pinaster - INRA_composite_2012 - LG10 m315 SNP 41.37 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG10 m315 SNP 41.98 (cM) Automated name-based View Maps
FM945536 SNP 44.76 Pinus pinaster - INRA_composite_2012 - LG10 FM945536 SNP 41.40 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG10 FM945536 SNP 41.98 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG10 FM945536 SNP 46.38 (cM) Automated name-based View Maps
ssrPt_ctg7824 eSSR 50.63 Pinus pinaster - INIA_INRA2012 - LG10 ssrPt_ctg7824 eSSR 47.95 (cM) Automated name-based View Maps
F51TW9001AXMPS SNP 53.01 Pinus pinaster - INRA_composite_2012 - LG10 F51TW9001AXMPS SNP 49.65 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG10 F51TW9001AXMPS SNP 50.33 (cM) Automated name-based View Maps
F51TW9001AQ3YZ SNP 60.38 Pinus pinaster - INIA_composite_2012 - LG10 F51TW9001AQ3YZ SNP 64.61 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG10 F51TW9001AQ3YZ SNP 62.56 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG10 F51TW9001AQ3YZ SNP 57.02 (cM) Automated name-based View Maps
CT578893 SNP 60.38 Pinus pinaster - INRA_composite_2012 - LG10 CT578893 SNP 57.02 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG10 CT578893 SNP 62.56 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG10 CT578893 SNP 64.61 (cM) Automated name-based View Maps
BX253076 SNP 61.56 Pinus pinaster - INIA_INRA2012 - LG10 BX253076 SNP 58.88 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG10 BX253076 SNP 58.20 (cM) Automated name-based View Maps
ssrPp_A6F03 eSSR 65.24 Pinus pinaster - INIA_INRA2012 - LG10 ssrPp_A6F03 eSSR 62.56 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG10 ssrPp_A6F03 eSSR 61.88 (cM) Automated name-based View Maps
F5X2MQL01DD0T1 SNP 65.32 Pinus pinaster - INIA_composite_2012 - LG10 F5X2MQL01DD0T1 SNP 64.25 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG10 F5X2MQL01DD0T1 SNP 68.21 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG10 F5X2MQL01DD0T1 SNP 61.96 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG10 F5X2MQL01DD0T1 SNP 62.56 (cM) Automated name-based View Maps

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