CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-F2_H12_2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG4
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - F2_H12_2012 [ View Map Set Info ]
Map Name: LG4
Map Start: 0.00 cM
Map Stop: 137.78 cM
Features by Type:
99 SNP
99 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 99.       of 4 | Next
Pinus pinaster - F2_H12_2012 - LG4
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
BX249896 SNP 0.00 Pinus pinaster - INRA_composite_2012 - LG4 BX249896 SNP 4.41 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG4F BX249896 SNP 2.46 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG4 BX249896 SNP 5.83 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG4 BX249896 SNP 8.35 (cM) Automated name-based View Maps
BX248904 SNP 1.09 Pinus pinaster - INIA_INRA2012 - LG4 BX248904 SNP 7.35 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG4 BX248904 SNP 5.50 (cM) Automated name-based View Maps
F51TW9002F1DX7 SNP 1.09 Pinus pinaster - G2_G2M_2012 - LG4M F51TW9002F1DX7 (0/15) SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG4F F51TW9002F1DX7 (0/15) SNP 2.46 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG4 F51TW9002F1DX7 SNP 7.35 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG4 F51TW9002F1DX7 SNP 5.50 (cM) Automated name-based View Maps
SNPnew109 SNP 1.51 Pinus pinaster - INRA_composite_2012 - LG4 SNPnew109 SNP 5.90 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG4 SNPnew109 SNP 7.35 (cM) Automated name-based View Maps
SNPnew28 SNP 2.66 Pinus pinaster - INIA_INRA2012 - LG4 SNPnew28 SNP 7.35 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG4 SNPnew28 SNP 5.90 (cM) Automated name-based View Maps
BX681357 SNP 3.56 Pinus pinaster - G2_G2M_2012 - LG4M BX681357 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG4 BX681357 SNP 7.35 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG4 BX681357 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG4 BX681357 SNP 5.90 (cM) Automated name-based View Maps
BX678393 SNP 11.61 Pinus pinaster - INRA_composite_2012 - LG4 BX678393 SNP 14.85 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG4 BX678393 SNP 7.35 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG4 BX678393 SNP 8.07 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG4M BX678393 SNP 9.79 (cM) Automated name-based View Maps
CR392953 SNP 15.65 Pinus pinaster - INIA_INRA2012 - LG4 CR392953 SNP 8.69 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG4 CR392953 SNP 17.99 (cM) Automated name-based View Maps
BX249233 SNP 18.86 Pinus pinaster - INRA_composite_2012 - LG4 BX249233 SNP 21.20 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG4 BX249233 SNP 11.90 (cM) Automated name-based View Maps
BX679619 SNP 22.16 Pinus pinaster - INIA_composite_2012 - LG4 BX679619 SNP 12.90 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG4M BX679619 SNP 13.50 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG4 BX679619 SNP 21.20 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG4 BX679619 SNP 11.90 (cM) Automated name-based View Maps
F51TW9001AFSCM SNP 23.04 Pinus pinaster - INRA_composite_2012 - LG4 F51TW9001AFSCM SNP 21.27 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG4 F51TW9001AFSCM SNP 12.25 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG4M F51TW9001AFSCM SNP 16.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG4 F51TW9001AFSCM SNP 11.90 (cM) Automated name-based View Maps
F51TW9001CRMYX SNP 23.04 Pinus pinaster - INRA_composite_2012 - LG4 F51TW9001CRMYX SNP 25.38 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG4 F51TW9001CRMYX SNP 14.24 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG4F F51TW9001CRMYX (2/11) SNP 6.00 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG4M F51TW9001CRMYX (0/13) SNP 16.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG4 F51TW9001CRMYX SNP 13.69 (cM) Automated name-based View Maps
BX254739 SNP 30.97 Pinus pinaster - INIA_composite_2012 - LG4 BX254739 SNP 22.91 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG4 BX254739 SNP 22.28 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG4M BX254739 SNP 29.85 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG4 BX254739 SNP 33.97 (cM) Automated name-based View Maps
F51TW9002F0Z9T SNP 30.97 Pinus pinaster - INIA_INRA2012 - LG4 F51TW9002F0Z9T SNP 22.28 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG4 F51TW9002F0Z9T SNP 22.52 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG4 F51TW9002F0Z9T SNP 33.97 (cM) Automated name-based View Maps
SNPnew24 SNP 35.93 Pinus pinaster - INRA_composite_2012 - LG4 SNPnew24 SNP 38.94 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG4 SNPnew24 SNP 27.15 (cM) Automated name-based View Maps
BX681399 SNP 36.74 Pinus pinaster - INIA_INRA2012 - LG4 BX681399 SNP 27.38 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG4F BX681399 SNP 37.35 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG4 BX681399 SNP 39.36 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG4 BX681399 SNP 41.63 (cM) Automated name-based View Maps
F51TW9001A0SJD SNP 37.98 Pinus pinaster - G2_G2F_2012 - LG4F F51TW9001A0SJD SNP 37.35 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG4 F51TW9001A0SJD SNP 41.63 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG4 F51TW9001A0SJD SNP 27.38 (cM) Automated name-based View Maps
BX254036 SNP 38.62 Pinus pinaster - INIA_INRA2012 - LG4 BX254036 SNP 27.38 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG4 BX254036 SNP 41.63 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG4M BX254036 SNP 50.48 (cM) Automated name-based View Maps
BX682788 SNP 39.74 Pinus pinaster - INIA_INRA2012 - LG4 BX682788 SNP 27.38 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG4F BX682788 SNP 37.35 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG4 BX682788 SNP 41.63 (cM) Automated name-based View Maps
F51TW9001BVD7X SNP 39.74 Pinus pinaster - INRA_composite_2012 - LG4 F51TW9001BVD7X SNP 41.63 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG4 F51TW9001BVD7X SNP 36.42 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG4F F51TW9001BVD7X SNP 37.35 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG4 F51TW9001BVD7X SNP 27.38 (cM) Automated name-based View Maps
BX253954 SNP 39.74 Pinus pinaster - INIA_composite_2012 - LG4 BX253954 SNP 32.18 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG4 BX253954 SNP 41.63 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG4F BX253954 SNP 37.35 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG4 BX253954 SNP 27.38 (cM) Automated name-based View Maps
F51TW9001C9UQT SNP 39.74 Pinus pinaster - INIA_composite_2012 - LG4 F51TW9001C9UQT SNP 32.18 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG4 F51TW9001C9UQT SNP 27.38 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG4 F51TW9001C9UQT SNP 41.63 (cM) Automated name-based View Maps
F51TW9001ELOKF SNP 40.82 Pinus pinaster - INIA_composite_2012 - LG4 F51TW9001ELOKF SNP 30.42 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG4M F51TW9001ELOKF SNP 41.49 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG4 F51TW9001ELOKF SNP 41.63 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG4 F51TW9001ELOKF SNP 27.38 (cM) Automated name-based View Maps
CT576698 SNP 40.82 Pinus pinaster - INRA_composite_2012 - LG4 CT576698 SNP 41.63 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG4F CT576698 SNP 34.93 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG4 CT576698 SNP 27.38 (cM) Automated name-based View Maps
BX250497 SNP 40.82 Pinus pinaster - INRA_composite_2012 - LG4 BX250497 SNP 41.63 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG4 BX250497 SNP 27.38 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG4M BX250497 SNP 40.24 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG4 BX250497 SNP 28.38 (cM) Automated name-based View Maps

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