CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-G2_G2M_2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG11M
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
eSSR
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - G2_G2M_2012 [ View Map Set Info ]
Map Name: LG11M
Map Start: 0.00 cM
Map Stop: 104.02 cM
Features by Type:
89 SNP
2 eSSR
91 Total

Map Features

Restrict by Map:
[ Download Map Data ]
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Items 1 to 25 of 91.       of 4 | Next
Pinus pinaster - G2_G2M_2012 - LG11M
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
m185 SNP 0.00 Pinus pinaster - INRA_composite_2012 - LG11 m185 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG11 m185 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 m185 SNP 5.24 (cM) Automated name-based View Maps
F51TW9002GFVMT SNP 0.00 Pinus pinaster - INIA_composite_2012 - LG11 F51TW9002GFVMT SNP 16.74 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 F51TW9002GFVMT SNP 1.23 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 F51TW9002GFVMT SNP 5.24 (cM) Automated name-based View Maps
BX678473 SNP 0.00 Pinus pinaster - INIA_INRA2012 - LG11 BX678473 SNP 5.24 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 BX678473 SNP 1.23 (cM) Automated name-based View Maps
BX253174 SNP 0.00 Pinus pinaster - INRA_composite_2012 - LG11 BX253174 SNP 2.59 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG11 BX253174 SNP 4.28 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG11 BX253174 SNP 3.42 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 BX253174 SNP 5.24 (cM) Automated name-based View Maps
CR392965 SNP 0.00 Pinus pinaster - INIA_INRA2012 - LG11 CR392965 SNP 5.24 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 CR392965 SNP 1.23 (cM) Automated name-based View Maps
AL751188 SNP 0.00 Pinus pinaster - INRA_composite_2012 - LG11 AL751188 SNP 1.23 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 AL751188 SNP 5.24 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG11 AL751188 SNP 16.74 (cM) Automated name-based View Maps
CR392669 SNP 3.68 Pinus pinaster - INIA_INRA2012 - LG11 CR392669 SNP 5.24 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG11 CR392669 SNP 8.69 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 CR392669 SNP 2.59 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG11F CR392669 SNP 0.00 (cM) Automated name-based View Maps
F51TW9001BR7DE SNP 3.68 Pinus pinaster - INRA_composite_2012 - LG11 F51TW9001BR7DE SNP 2.59 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 F51TW9001BR7DE SNP 5.24 (cM) Automated name-based View Maps
CT576574 SNP 3.68 Pinus pinaster - INRA_composite_2012 - LG11 CT576574 SNP 2.59 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 CT576574 SNP 5.24 (cM) Automated name-based View Maps
F51TW9001BIE15 SNP 8.71 Pinus pinaster - INIA_composite_2012 - LG11 F51TW9001BIE15 SNP 8.72 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 F51TW9001BIE15 SNP 5.27 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 F51TW9001BIE15 SNP 5.27 (cM) Automated name-based View Maps
FN706290 SNP 17.65 Pinus pinaster - INIA_INRA2012 - LG11 FN706290 SNP 12.38 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG11 FN706290 SNP 16.74 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 FN706290 SNP 14.21 (cM) Automated name-based View Maps
BX254138 SNP 17.65 Pinus pinaster - INRA_composite_2012 - LG11 BX254138 SNP 12.67 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 BX254138 SNP 5.29 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG11 BX254138 SNP 12.72 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG11 BX254138 SNP 16.74 (cM) Automated name-based View Maps
AL750179 SNP 20.26 Pinus pinaster - F2_H12_2012 - LG11 AL750179 SNP 20.03 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 AL750179 SNP 16.82 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG11 AL750179 SNP 20.02 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 AL750179 SNP 16.29 (cM) Automated name-based View Maps
BX252695 SNP 22.89 Pinus pinaster - INIA_composite_2012 - LG11 BX252695 SNP 23.06 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 BX252695 SNP 18.92 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 BX252695 SNP 19.45 (cM) Automated name-based View Maps
BX253264 SNP 33.46 Pinus pinaster - INIA_composite_2012 - LG11 BX253264 SNP 34.61 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 BX253264 SNP 30.02 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 BX253264 SNP 30.75 (cM) Automated name-based View Maps
BX253098 SNP 33.46 Pinus pinaster - F2_H12_2012 - LG11 BX253098 SNP 34.13 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 BX253098 SNP 30.02 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG11 BX253098 SNP 36.49 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 BX253098 SNP 31.57 (cM) Automated name-based View Maps
CT577256 SNP 33.46 Pinus pinaster - INRA_composite_2012 - LG11 CT577256 SNP 30.02 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 CT577256 SNP 30.75 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG11 CT577256 SNP 34.61 (cM) Automated name-based View Maps
F51TW9001A7J0O SNP 34.71 Pinus pinaster - INRA_composite_2012 - LG11 F51TW9001A7J0O SNP 31.26 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG11 F51TW9001A7J0O SNP 36.44 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 F51TW9001A7J0O SNP 32.78 (cM) Automated name-based View Maps
CT577290 SNP 37.34 Pinus pinaster - INIA_composite_2012 - LG11 CT577290 SNP 39.24 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 CT577290 SNP 33.90 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 CT577290 SNP 34.69 (cM) Automated name-based View Maps
F51TW9002GU2AK SNP 40.78 Pinus pinaster - INRA_composite_2012 - LG11 F51TW9002GU2AK SNP 37.34 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG11 F51TW9002GU2AK SNP 42.30 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 F51TW9002GU2AK SNP 38.44 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG11 F51TW9002GU2AK SNP 43.07 (cM) Automated name-based View Maps
BX248944 SNP 40.78 Pinus pinaster - INRA_composite_2012 - LG11 BX248944 SNP 37.34 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG11 BX248944 SNP 40.25 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 BX248944 SNP 38.13 (cM) Automated name-based View Maps
m561 SNP 40.80 Pinus pinaster - INRA_composite_2012 - LG11 m561 SNP 37.36 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG11 m561 SNP 42.74 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 m561 SNP 38.44 (cM) Automated name-based View Maps
BX252216 SNP 44.48 Pinus pinaster - F2_H12_2012 - LG11 BX252216 SNP 44.76 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG11 BX252216 SNP 43.03 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG11F BX252216 SNP 28.54 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 BX252216 SNP 39.38 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 BX252216 SNP 38.44 (cM) Automated name-based View Maps
FM945712 SNP 44.48 Pinus pinaster - INRA_composite_2012 - LG11 FM945712 SNP 41.71 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 FM945712 SNP 43.48 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG11 FM945712 SNP 47.09 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG11 FM945712 SNP 46.30 (cM) Automated name-based View Maps
BX784169 SNP 48.15 Pinus pinaster - INIA_composite_2012 - LG11 BX784169 SNP 54.95 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 BX784169 SNP 45.38 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG11 BX784169 SNP 50.78 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 BX784169 SNP 49.43 (cM) Automated name-based View Maps

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