CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-G2_G2M_2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG12M
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
eSSR
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - G2_G2M_2012 [ View Map Set Info ]
Map Name: LG12M
Map Start: 0.00 cM
Map Stop: 130.17 cM
Features by Type:
93 SNP
2 eSSR
95 Total

Map Features

Restrict by Map:
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Items 1 to 25 of 95.       of 4 | Next
Pinus pinaster - G2_G2M_2012 - LG12M
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
FN693080 SNP 0.00 Pinus pinaster - INIA_INRA2012 - LG12 FN693080 SNP 2.72 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG12 FN693080 SNP 2.72 (cM) Automated name-based View Maps
AL749766 SNP 2.50 Pinus pinaster - INRA_composite_2012 - LG12 AL749766 SNP 2.72 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG12 AL749766 SNP 2.72 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG12 AL749766 SNP 1.65 (cM) Automated name-based View Maps
AL750175 SNP 5.82 Pinus pinaster - INIA_INRA2012 - LG12 AL750175 SNP 2.72 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG12 AL750175 SNP 2.72 (cM) Automated name-based View Maps
BX678011 SNP 5.86 Pinus pinaster - INIA_INRA2012 - LG12 BX678011 SNP 2.72 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG12 BX678011 SNP 2.72 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG12F BX678011 (6/15) SNP 9.92 (cM) Automated name-based View Maps
F51TW9001A4R6D SNP 5.86 Pinus pinaster - INIA_INRA2012 - LG12 F51TW9001A4R6D SNP 2.72 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG12 F51TW9001A4R6D SNP 2.72 (cM) Automated name-based View Maps
m756 SNP 6.74 Pinus pinaster - INRA_composite_2012 - LG12 m756 SNP 2.72 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG12 m756 SNP 2.72 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG12F m756 SNP 0.00 (cM) Automated name-based View Maps
384_Myb2 SNP 7.08 Pinus pinaster - INIA_INRA2012 - LG12 384_Myb2 SNP 13.92 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG12F 384_Myb2 SNP 29.76 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG12 384_Myb2 SNP 13.86 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG12 384_Myb2 (0/24) SNP 13.34 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG12 384_Myb2 SNP 12.01 (cM) Automated name-based View Maps
m758 SNP 7.14 Pinus pinaster - G2_G2F_2012 - LG12F m758 (1/16) SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG12 m758 SNP 13.92 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG12 m758 SNP 13.92 (cM) Automated name-based View Maps
AL749729 SNP 8.31 Pinus pinaster - INRA_composite_2012 - LG12 AL749729 SNP 15.09 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG12 AL749729 SNP 15.31 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG12F AL749729 (0/9) SNP 30.32 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG12 AL749729 SNP 16.84 (cM) Automated name-based View Maps
BX681185 SNP 8.31 Pinus pinaster - INRA_composite_2012 - LG12 BX681185 SNP 15.09 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG12 BX681185 SNP 15.09 (cM) Automated name-based View Maps
F51TW9001DJ7E6 SNP 8.31 Pinus pinaster - INIA_INRA2012 - LG12 F51TW9001DJ7E6 SNP 15.09 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG12 F51TW9001DJ7E6 SNP 15.09 (cM) Automated name-based View Maps
BX255764 SNP 8.31 Pinus pinaster - INRA_composite_2012 - LG12 BX255764 SNP 15.09 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG12 BX255764 SNP 15.09 (cM) Automated name-based View Maps
F51TW9001A19HT SNP 10.76 Pinus pinaster - INIA_composite_2012 - LG12 F51TW9001A19HT SNP 18.81 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG12 F51TW9001A19HT SNP 20.38 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG12 F51TW9001A19HT SNP 20.34 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG12 F51TW9001A19HT SNP 21.24 (cM) Automated name-based View Maps
CT578308 SNP 11.73 Pinus pinaster - INIA_composite_2012 - LG12 CT578308 SNP 22.56 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG12 CT578308 SNP 21.54 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG12 CT578308 SNP 21.24 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG12 CT578308 SNP 25.45 (cM) Automated name-based View Maps
F51TW9001CC9GB SNP 30.26 Pinus pinaster - INRA_composite_2012 - LG12 F51TW9001CC9GB SNP 40.74 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG12 F51TW9001CC9GB SNP 39.03 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG12 F51TW9001CC9GB SNP 34.61 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG12 F51TW9001CC9GB SNP 43.34 (cM) Automated name-based View Maps
m647 SNP 30.55 Pinus pinaster - INRA_composite_2012 - LG12 m647 SNP 40.74 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG12 m647 SNP 43.65 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG12 m647 SNP 42.40 (cM) Automated name-based View Maps
ssr_NZPR1702 eSSR 41.88 Pinus pinaster - INIA_INRA2012 - LG12 ssr_NZPR1702 eSSR 42.44 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG12 ssr_NZPR1702 eSSR 45.31 (cM) Automated name-based View Maps
BX249563 SNP 48.90 Pinus pinaster - INIA_INRA2012 - LG12 BX249563 SNP 46.39 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG12 BX249563 SNP 52.33 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG12 BX249563 SNP 52.78 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG12 BX249563 SNP 41.57 (cM) Automated name-based View Maps
F51TW9001C9D02 SNP 55.08 Pinus pinaster - INRA_composite_2012 - LG12 F51TW9001C9D02 SNP 57.94 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG12 F51TW9001C9D02 SNP 39.03 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG12 F51TW9001C9D02 SNP 58.08 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG12 F51TW9001C9D02 SNP 32.74 (cM) Automated name-based View Maps
BX677036 SNP 55.08 Pinus pinaster - F2_H12_2012 - LG12 BX677036 SNP 58.77 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG12 BX677036 SNP 58.32 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG12 BX677036 SNP 51.18 (cM) Automated name-based View Maps
BX249967 SNP 56.28 Pinus pinaster - INRA_composite_2012 - LG12 BX249967 SNP 59.41 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG12 BX249967 SNP 59.55 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG12 BX249967 SNP 52.27 (cM) Automated name-based View Maps
CT582201 SNP 59.99 Pinus pinaster - INRA_composite_2012 - LG12 CT582201 SNP 63.41 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG12 CT582201 SNP 56.27 (cM) Automated name-based View Maps
CT578593 SNP 59.99 Pinus pinaster - INRA_composite_2012 - LG12 CT578593 SNP 63.41 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG12 CT578593 SNP 60.71 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG12 CT578593 SNP 58.41 (cM) Automated name-based View Maps
CR354669 SNP 62.44 Pinus pinaster - INRA_composite_2012 - LG12 CR354669 SNP 70.01 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG12 CR354669 SNP 71.12 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG12 CR354669 SNP 63.55 (cM) Automated name-based View Maps
CT582621 SNP 66.19 Pinus pinaster - INRA_composite_2012 - LG12 CT582621 SNP 70.01 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG12 CT582621 SNP 67.02 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG12 CT582621 SNP 68.07 (cM) Automated name-based View Maps

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