CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-F2_H12_2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG1
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - F2_H12_2012 [ View Map Set Info ]
Map Name: LG1
Map Start: 0.00 cM
Map Stop: 125.99 cM
Features by Type:
72 SNP
72 Total

Map Features

Restrict by Map:
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Items 1 to 25 of 72.       of 3 | Next
Pinus pinaster - F2_H12_2012 - LG1
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
BX679184 SNP 0.00 Pinus pinaster - G2_G2F_2012 - LG1F BX679184 (0/13) SNP 3.48 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG1M BX679184 (0/13) SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 BX679184 SNP 3.24 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 BX679184 SNP 3.24 (cM) Automated name-based View Maps
F51TW9001AGDRR SNP 0.00 Pinus pinaster - G2_G2M_2012 - LG1M F51TW9001AGDRR SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 F51TW9001AGDRR SNP 3.24 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 F51TW9001AGDRR SNP 3.24 (cM) Automated name-based View Maps
m289 SNP 0.20 Pinus pinaster - INIA_composite_2012 - LG1 m289 SNP 7.17 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 m289 SNP 7.17 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG1F m289 SNP 3.44 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 m289 SNP 3.44 (cM) Automated name-based View Maps
BX249690 SNP 0.68 Pinus pinaster - INIA_INRA2012 - LG1 BX249690 SNP 7.65 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 BX249690 SNP 3.92 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG1M BX249690 SNP 2.47 (cM) Automated name-based View Maps
BX253724 SNP 0.68 Pinus pinaster - INRA_composite_2012 - LG1 BX253724 SNP 3.92 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 BX253724 SNP 7.65 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG1F BX253724 SNP 3.48 (cM) Automated name-based View Maps
BX254593 SNP 2.25 Pinus pinaster - INRA_composite_2012 - LG1 BX254593 SNP 5.49 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 BX254593 SNP 9.22 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG1M BX254593 SNP 4.95 (cM) Automated name-based View Maps
BX678903 SNP 6.20 Pinus pinaster - INIA_INRA2012 - LG1 BX678903 SNP 9.22 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 BX678903 SNP 5.49 (cM) Automated name-based View Maps
BX253918 SNP 8.73 Pinus pinaster - G2_G2F_2012 - LG1F BX253918 (0/11) SNP 9.62 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 BX253918 SNP 11.54 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG1M BX253918 (0/11) SNP 12.44 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 BX253918 SNP 6.62 (cM) Automated name-based View Maps
BX255626 SNP 12.17 Pinus pinaster - INIA_composite_2012 - LG1 BX255626 SNP 17.96 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG1F BX255626 SNP 9.62 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 BX255626 SNP 10.06 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 BX255626 SNP 13.14 (cM) Automated name-based View Maps
m495 SNP 13.25 Pinus pinaster - INIA_INRA2012 - LG1 m495 SNP 14.19 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 m495 SNP 11.14 (cM) Automated name-based View Maps
BX679009 SNP 13.65 Pinus pinaster - INIA_INRA2012 - LG1 BX679009 SNP 14.59 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 BX679009 SNP 11.54 (cM) Automated name-based View Maps
AL749811 SNP 13.65 Pinus pinaster - INIA_INRA2012 - LG1 AL749811 SNP 14.59 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 AL749811 SNP 11.54 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG1 AL749811 SNP 17.96 (cM) Automated name-based View Maps
SNPnew121 SNP 20.83 Pinus pinaster - INRA_composite_2012 - LG1 SNPnew121 SNP 18.72 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 SNPnew121 SNP 23.93 (cM) Automated name-based View Maps
SNPnew101 SNP 21.22 Pinus pinaster - INIA_INRA2012 - LG1 SNPnew101 SNP 24.32 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 SNPnew101 SNP 19.11 (cM) Automated name-based View Maps
CT577655 SNP 21.70 Pinus pinaster - INIA_INRA2012 - LG1 CT577655 SNP 24.80 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 CT577655 SNP 19.59 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG1 CT577655 SNP 29.62 (cM) Automated name-based View Maps
SNPnew122 SNP 21.90 Pinus pinaster - INRA_composite_2012 - LG1 SNPnew122 SNP 19.79 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 SNPnew122 SNP 25.00 (cM) Automated name-based View Maps
BX255070 SNP 23.19 Pinus pinaster - INRA_composite_2012 - LG1 BX255070 SNP 21.08 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG1 BX255070 SNP 34.14 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG1F BX255070 SNP 20.66 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 BX255070 SNP 32.19 (cM) Automated name-based View Maps
m816 SNP 31.10 Pinus pinaster - INIA_composite_2012 - LG1 m816 SNP 39.23 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG1F m816 SNP 31.06 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 m816 SNP 37.85 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 m816 SNP 28.99 (cM) Automated name-based View Maps
CT576309 SNP 34.20 Pinus pinaster - INRA_composite_2012 - LG1 CT576309 SNP 29.77 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 CT576309 SNP 44.12 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG1 CT576309 SNP 50.69 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG1M CT576309 SNP 21.11 (cM) Automated name-based View Maps
m770 SNP 41.79 Pinus pinaster - INRA_composite_2012 - LG1 m770 SNP 37.36 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG1 m770 SNP 48.60 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 m770 SNP 44.12 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG1F m770 (2/10) SNP 40.39 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG1M m770 (1/16) SNP 29.69 (cM) Automated name-based View Maps
BX250363 SNP 42.75 Pinus pinaster - INIA_composite_2012 - LG1 BX250363 SNP 49.90 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 BX250363 SNP 44.12 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 BX250363 SNP 38.32 (cM) Automated name-based View Maps
F51TW9001B4DKA SNP 42.75 Pinus pinaster - INRA_composite_2012 - LG1 F51TW9001B4DKA SNP 38.32 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 F51TW9001B4DKA SNP 44.12 (cM) Automated name-based View Maps
F51TW9001CVPBT SNP 42.75 Pinus pinaster - G2_G2F_2012 - LG1F F51TW9001CVPBT (2/14) SNP 42.38 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 F51TW9001CVPBT SNP 44.12 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG1 F51TW9001CVPBT SNP 50.05 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 F51TW9001CVPBT SNP 38.32 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG1M F51TW9001CVPBT (7/7) SNP 18.57 (cM) Automated name-based View Maps
CT575003 SNP 42.75 Pinus pinaster - INRA_composite_2012 - LG1 CT575003 SNP 38.32 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG1F CT575003 SNP 40.39 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 CT575003 SNP 44.12 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG1 CT575003 SNP 46.60 (cM) Automated name-based View Maps
AL749957 SNP 42.75 Pinus pinaster - INIA_composite_2012 - LG1 AL749957 SNP 46.60 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG1 AL749957 SNP 44.12 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG1 AL749957 SNP 38.32 (cM) Automated name-based View Maps

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