CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-INIA_C14_2014  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG8
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
EST
SAMPL
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - INIA_C14_2014 [ View Map Set Info ]
Map Name: LG8
Map Start: 0.00 cM
Map Stop: 128.61 cM
Features by Type:
1 EST
51 SNP
6 SAMPL
58 Total

Map Features

Restrict by Map:
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Items 1 to 25 of 58.       of 3 | Next
Pinus pinaster - INIA_C14_2014 - LG8
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
FN694732-631 SNP 0.00 No other positions
C-CATA/E39_421 SAMPL 10.60 No other positions
AL749591-1543 SNP 12.32 No other positions
FN706172-892 SNP 13.80 No other positions
F51TW9001AM6TF-1079 SNP 13.80 No other positions
FN706172-122 SNP 13.80 No other positions
F51TW9001A0TXI-1103 SNP 16.80 No other positions
BX251930-1172 SNP 16.80 No other positions
EST1CA6C95 EST 32.10 Pinus pinaster - INIA_INRA2012 - LG8 EST1CA6C95 EST 40.96 (cM) Automated name-based View Maps
Pinaceae - INRA_Pinaceae_composite_2015 - LG8 EST1CA6C95 EST 56.10 (cM) Automated name-based View Maps
Pinus - INRA_Pinus_composite_2015 - LG8 EST1CA6C95 EST 46.40 (cM) Automated name-based View Maps
Pinus pinaster - INRA_Ppinaster_composite_2015 - LG8 EST1CA6C95 EST 46.50 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG8 EST1CA6C95 EST 46.19 (cM) Automated name-based View Maps
BX251882-240 SNP 49.26 No other positions
BX251882-550 SNP 50.67 No other positions
BX251882-129 SNP 50.71 No other positions
i11115s146pg SNP 59.32 No other positions
i11115s82pg SNP 59.51 No other positions
AL750537-550 SNP 63.67 No other positions
AL750537-1404 SNP 63.70 No other positions
G-CATA/E35-134 SAMPL 66.39 No other positions
BX249621-1066 SNP 67.54 No other positions
BX255358-489 SNP 74.22 No other positions
AL750591-840 SNP 74.88 No other positions
F51TW9002J1WGY-647 SNP 75.00 No other positions
i15169s407pg SNP 75.05 No other positions
i15169s267pg SNP 75.39 No other positions
F51TW9001B2AXP-340 SNP 76.03 No other positions
F51TW9001AVVHH-381 SNP 79.01 No other positions

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