CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-INIA_C15_2014  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG11
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
EST
SAMPL
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - INIA_C15_2014 [ View Map Set Info ]
Map Name: LG11
Map Start: 0.00 cM
Map Stop: 104.39 cM
Features by Type:
1 EST
70 SNP
3 SAMPL
74 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 74.       of 3 | Next
Pinus pinaster - INIA_C15_2014 - LG11
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
BX677559-67 SNP 0.00 No other positions
F51TW9001A45MK-365 SNP 0.17 No other positions
F51TW9002GFVMT-276 SNP 0.17 No other positions
BX254138-1099 SNP 0.22 No other positions
AL751188-1928 SNP 0.22 No other positions
m218 SNP 0.88 No other positions
m219 SNP 0.92 No other positions
i10965s361pg SNP 1.35 No other positions
C-GATA/E34_125 SNP 1.52 No other positions
FN706290-156 SNP 2.58 No other positions
FN706290-1117 SNP 3.29 No other positions
CT577155-1078 SNP 5.33 No other positions
CT577155-557 SNP 5.43 No other positions
AL750179-700 SNP 9.47 No other positions
BX252695-2465 SNP 9.90 No other positions
BX252695-133 SNP 11.00 No other positions
AL749873-490 SNP 11.00 No other positions
BX254484-543 SNP 11.04 No other positions
i10806s461pg SNP 13.04 No other positions
CT575586-349 SNP 15.89 No other positions
BX679748-1058 SNP 23.31 No other positions
CT577256-736 SNP 23.31 No other positions
T-CATA/E40_78 SAMPL 23.37 No other positions
C-CATA/E39_196 SNP 28.35 No other positions
i13232s811 SNP 29.77 No other positions

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