CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-F2_H12_2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG5
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - F2_H12_2012 [ View Map Set Info ]
Map Name: LG5
Map Start: 0.00 cM
Map Stop: 155.32 cM
Features by Type:
95 SNP
95 Total

Map Features

Restrict by Map:
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Items 1 to 25 of 95.       of 4 | Next
Pinus pinaster - F2_H12_2012 - LG5
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
FN256783 SNP 0.00 Pinus pinaster - G2_G2M_2012 - LG5M FN256783 (5/18) SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 FN256783 SNP 2.51 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 FN256783 SNP 0.00 (cM) Automated name-based View Maps
BX255673 SNP 0.77 Pinus pinaster - INIA_INRA2012 - LG5 BX255673 SNP 3.28 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG5M BX255673 (8/14) SNP 13.39 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG5 BX255673 SNP 2.65 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 BX255673 SNP 0.77 (cM) Automated name-based View Maps
F51TW9001BR2I6 SNP 0.77 Pinus pinaster - INIA_INRA2012 - LG5 F51TW9001BR2I6 SNP 3.28 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 F51TW9001BR2I6 SNP 0.77 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG5F F51TW9001BR2I6 SNP 0.00 (cM) Automated name-based View Maps
BX253242 SNP 2.37 Pinus pinaster - G2_G2M_2012 - LG5M BX253242 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 BX253242 SNP 3.17 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 BX253242 SNP 5.68 (cM) Automated name-based View Maps
CT578845 SNP 3.17 Pinus pinaster - INRA_composite_2012 - LG5 CT578845 SNP 3.17 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 CT578845 SNP 5.68 (cM) Automated name-based View Maps
m993 SNP 4.62 Pinus pinaster - INRA_composite_2012 - LG5 m993 SNP 4.02 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 m993 SNP 6.53 (cM) Automated name-based View Maps
CT578526 SNP 14.35 Pinus pinaster - INIA_INRA2012 - LG5 CT578526 SNP 19.37 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG5 CT578526 SNP 29.93 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 CT578526 SNP 13.75 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG5F CT578526 SNP 11.40 (cM) Automated name-based View Maps
BX251492 SNP 14.35 Pinus pinaster - INIA_composite_2012 - LG5 BX251492 SNP 25.40 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 BX251492 SNP 13.75 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 BX251492 SNP 19.37 (cM) Automated name-based View Maps
F51TW9001B7T52 SNP 17.46 Pinus pinaster - INIA_INRA2012 - LG5 F51TW9001B7T52 SNP 19.37 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG5F F51TW9001B7T52 SNP 16.33 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 F51TW9001B7T52 SNP 16.86 (cM) Automated name-based View Maps
m349 SNP 18.00 Pinus pinaster - INRA_composite_2012 - LG5 m349 SNP 16.86 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 m349 SNP 19.37 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG5F m349 (0/9) SNP 16.33 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG5M m349 (0/9) SNP 9.29 (cM) Automated name-based View Maps
SNPnew59 SNP 24.66 Pinus pinaster - INRA_composite_2012 - LG5 SNPnew59 SNP 23.19 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 SNPnew59 SNP 25.70 (cM) Automated name-based View Maps
m658 SNP 24.75 Pinus pinaster - INIA_INRA2012 - LG5 m658 SNP 25.79 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG5F m658 SNP 22.73 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 m658 SNP 23.28 (cM) Automated name-based View Maps
BX680344 SNP 25.43 Pinus pinaster - INIA_INRA2012 - LG5 BX680344 SNP 25.79 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 BX680344 SNP 23.28 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG5F BX680344 SNP 22.74 (cM) Automated name-based View Maps
F51TW9001C77R3 SNP 25.57 Pinus pinaster - INRA_composite_2012 - LG5 F51TW9001C77R3 SNP 23.28 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 F51TW9001C77R3 SNP 25.79 (cM) Automated name-based View Maps
F51TW9001CM78O SNP 25.57 Pinus pinaster - INIA_composite_2012 - LG5 F51TW9001CM78O SNP 36.08 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG5F F51TW9001CM78O (0/11) SNP 22.74 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 F51TW9001CM78O SNP 25.79 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG5M F51TW9001CM78O (0/11) SNP 10.32 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 F51TW9001CM78O SNP 23.28 (cM) Automated name-based View Maps
BX248955 SNP 25.57 Pinus pinaster - INRA_composite_2012 - LG5 BX248955 SNP 23.28 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 BX248955 SNP 25.79 (cM) Automated name-based View Maps
BX251734 SNP 27.31 Pinus pinaster - INIA_INRA2012 - LG5 BX251734 SNP 25.79 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG5M BX251734 (0/13) SNP 10.32 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 BX251734 SNP 23.28 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG5 BX251734 SNP 37.54 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG5F BX251734 (2/11) SNP 16.33 (cM) Automated name-based View Maps
BX253830 SNP 27.31 Pinus pinaster - INRA_composite_2012 - LG5 BX253830 SNP 23.28 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 BX253830 SNP 25.79 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG5 BX253830 SNP 46.41 (cM) Automated name-based View Maps
F51TW9001A4DYB SNP 29.67 Pinus pinaster - INIA_composite_2012 - LG5 F51TW9001A4DYB SNP 48.35 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 F51TW9001A4DYB SNP 25.79 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 F51TW9001A4DYB SNP 23.28 (cM) Automated name-based View Maps
m1439 SNP 30.65 Pinus pinaster - INRA_composite_2012 - LG5 m1439 SNP 23.28 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 m1439 SNP 25.79 (cM) Automated name-based View Maps
F51TW9001CBE6N SNP 33.96 Pinus pinaster - INIA_INRA2012 - LG5 F51TW9001CBE6N SNP 25.79 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 F51TW9001CBE6N SNP 25.54 (cM) Automated name-based View Maps
BX249114 SNP 36.38 Pinus pinaster - INRA_composite_2012 - LG5 BX249114 SNP 27.96 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 BX249114 SNP 25.79 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG5 BX249114 SNP 52.01 (cM) Automated name-based View Maps
CT576406 SNP 37.08 Pinus pinaster - INIA_INRA2012 - LG5 CT576406 SNP 27.64 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 CT576406 SNP 28.66 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG5M CT576406 SNP 10.32 (cM) Automated name-based View Maps
CT581734 SNP 37.08 Pinus pinaster - INRA_composite_2012 - LG5 CT581734 SNP 27.96 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG5 CT581734 SNP 57.83 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 CT581734 SNP 25.79 (cM) Automated name-based View Maps
BX249551 SNP 37.08 Pinus pinaster - INIA_composite_2012 - LG5 BX249551 SNP 56.18 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG5M BX249551 SNP 10.32 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 BX249551 SNP 28.66 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG5 BX249551 SNP 27.64 (cM) Automated name-based View Maps

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