CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-F2_H12_2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG6
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - F2_H12_2012 [ View Map Set Info ]
Map Name: LG6
Map Start: 0.00 cM
Map Stop: 125.48 cM
Features by Type:
95 SNP
95 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 95.       of 4 | Next
Pinus pinaster - F2_H12_2012 - LG6
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
F51TW9001A8BQ6 SNP 0.00 Pinus pinaster - INRA_composite_2012 - LG6 F51TW9001A8BQ6 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 F51TW9001A8BQ6 SNP 1.45 (cM) Automated name-based View Maps
F51TW9002FN4GR SNP 0.00 Pinus pinaster - G2_G2M_2012 - LG6M F51TW9002FN4GR SNP 1.12 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 F51TW9002FN4GR SNP 1.46 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 F51TW9002FN4GR SNP 0.67 (cM) Automated name-based View Maps
BX679017 SNP 0.00 Pinus pinaster - INRA_composite_2012 - LG6 BX679017 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG6 BX679017 SNP 9.29 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 BX679017 SNP 1.45 (cM) Automated name-based View Maps
F51TW9001AV518 SNP 0.67 Pinus pinaster - INRA_composite_2012 - LG6 F51TW9001AV518 SNP 0.67 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG6M F51TW9001AV518 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG6 F51TW9001AV518 SNP 12.99 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 F51TW9001AV518 SNP 1.46 (cM) Automated name-based View Maps
BX252256 SNP 2.11 Pinus pinaster - INRA_composite_2012 - LG6 BX252256 SNP 2.78 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG6 BX252256 SNP 17.31 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG6F BX252256 SNP 0.37 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 BX252256 SNP 10.71 (cM) Automated name-based View Maps
BX252910 SNP 5.84 Pinus pinaster - INIA_composite_2012 - LG6 BX252910 SNP 18.61 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 BX252910 SNP 5.84 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 BX252910 SNP 10.77 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG6F BX252910 SNP 1.58 (cM) Automated name-based View Maps
SNPnew6 SNP 6.92 Pinus pinaster - INIA_INRA2012 - LG6 SNPnew6 SNP 10.77 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 SNPnew6 SNP 5.84 (cM) Automated name-based View Maps
SNPnew48 SNP 6.93 Pinus pinaster - INIA_INRA2012 - LG6 SNPnew48 SNP 10.77 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 SNPnew48 SNP 5.84 (cM) Automated name-based View Maps
m153 SNP 10.08 Pinus pinaster - INRA_composite_2012 - LG6 m153 SNP 8.31 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 m153 SNP 13.34 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG6F m153 SNP 3.94 (cM) Automated name-based View Maps
CT578882 SNP 10.19 Pinus pinaster - INRA_composite_2012 - LG6 CT578882 SNP 8.40 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG6 CT578882 SNP 17.58 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 CT578882 SNP 20.17 (cM) Automated name-based View Maps
384_CCoAomt1 SNP 10.19 Pinus pinaster - INIA_composite_2012 - LG6 384_CCoAomt1 SNP 16.08 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 384_CCoAomt1 SNP 18.67 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG6F 384_CCoAomt1 SNP 4.03 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 384_CCoAomt1 SNP 8.40 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG6M 384_CCoAomt1 SNP 11.13 (cM) Automated name-based View Maps
SNPnew52 SNP 10.48 Pinus pinaster - INRA_composite_2012 - LG6 SNPnew52 SNP 8.40 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 SNPnew52 SNP 18.67 (cM) Automated name-based View Maps
F51TW9001AQF5F SNP 10.64 Pinus pinaster - INIA_INRA2012 - LG6 F51TW9001AQF5F SNP 18.67 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 F51TW9001AQF5F SNP 8.40 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG6F F51TW9001AQF5F SNP 4.03 (cM) Automated name-based View Maps
CT575910 SNP 10.64 Pinus pinaster - INRA_composite_2012 - LG6 CT575910 SNP 8.40 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG6 CT575910 SNP 27.77 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG6M CT575910 SNP 9.93 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 CT575910 SNP 20.17 (cM) Automated name-based View Maps
CR393643 SNP 10.78 Pinus pinaster - INRA_composite_2012 - LG6 CR393643 SNP 8.40 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG6F CR393643 SNP 2.67 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG6 CR393643 SNP 16.03 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 CR393643 SNP 18.62 (cM) Automated name-based View Maps
BX249990 SNP 11.04 Pinus pinaster - INIA_composite_2012 - LG6 BX249990 SNP 17.58 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 BX249990 SNP 8.40 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG6F BX249990 SNP 4.03 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 BX249990 SNP 20.17 (cM) Automated name-based View Maps
m272 SNP 12.19 Pinus pinaster - INRA_composite_2012 - LG6 m272 SNP 8.81 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 m272 SNP 20.17 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG6F m272 SNP 4.44 (cM) Automated name-based View Maps
SNPnew42 SNP 13.45 Pinus pinaster - INIA_INRA2012 - LG6 SNPnew42 SNP 20.17 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 SNPnew42 SNP 10.07 (cM) Automated name-based View Maps
SNPnew43 SNP 13.50 Pinus pinaster - INIA_INRA2012 - LG6 SNPnew43 SNP 20.17 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 SNPnew43 SNP 10.12 (cM) Automated name-based View Maps
SNPnew110 SNP 17.27 Pinus pinaster - INRA_composite_2012 - LG6 SNPnew110 SNP 13.89 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 SNPnew110 SNP 22.33 (cM) Automated name-based View Maps
BX255383 SNP 17.76 Pinus pinaster - INIA_composite_2012 - LG6 BX255383 SNP 24.66 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG6M BX255383 SNP 15.98 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 BX255383 SNP 14.38 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 BX255383 SNP 22.82 (cM) Automated name-based View Maps
CR392936 SNP 21.61 Pinus pinaster - INRA_composite_2012 - LG6 CR392936 SNP 18.23 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 CR392936 SNP 18.64 (cM) Automated name-based View Maps
F51TW9001AWRA4 SNP 21.68 Pinus pinaster - INRA_composite_2012 - LG6 F51TW9001AWRA4 SNP 18.30 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG6 F51TW9001AWRA4 SNP 18.71 (cM) Automated name-based View Maps
BX681940 SNP 23.14 Pinus pinaster - INIA_INRA2012 - LG6 BX681940 SNP 20.17 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 BX681940 SNP 19.76 (cM) Automated name-based View Maps
CT575401 SNP 23.14 Pinus pinaster - INIA_INRA2012 - LG6 CT575401 SNP 20.17 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG6M CT575401 (0/12) SNP 27.73 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG6 CT575401 SNP 26.58 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG6F CT575401 (0/12) SNP 23.20 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG6 CT575401 SNP 19.76 (cM) Automated name-based View Maps

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