CMap COMPARATIVE MAP VIEWER

The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.

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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.

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Other options

Map Options  Map Options Map Set Add Maps Left Pinus-INRA_Pinus_composite_2015  (Reference Set) Add Maps Right Min. Correspondence Align Vertically Stack Maps LG5 Start Stop Magnification 1/8 1/4 1/2 Original 2 3 4 5 10 20 Flipped  Feature Options  Feature Options  Highlight Features    Feature Types Feature Ignore Display if Correspondence Always Display AFLP Contig EST EST_SSR RFLP SNP Other   Show labels None Landmarks All Collapse overlapping features No Yes  Correspondence Options  Correspondence Options   Include Correspondence Types Evidence Ignore Use Less than score Greater than score Score Automated name-based         Aggregate Correspondences No 1 Line 2 Lines Correspondence lines drawn to Feature Map View Intra-Slot Correspondences No yes Aggregate evidence types separately No yes  Display Options  Display Options Map Size tiny small medium large Custom Font Size Small Medium Large Image Type PNG JPEG GIF SVG * Clean View (no navigation buttons) No Yes Hide the Legend No Yes * SVG output for high-resolution printing only (no hyperlinks).  Advanced Options  Advanced Options Draw maps using same scale No Yes Clickable Image Use All Omit Features Omit All Buttons Menu Order of Comparative Maps Predefined order Number of correspondences Ignore image map sanity check No Yes