CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinaceae-INRA_Pinaceae_composite_2015  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG2
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
AFLP
Contig
EST
RFLP
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinaceae - INRA_Pinaceae_composite_2015 [ View Map Set Info ]
Map Name: LG2
Map Start: 0.00 cM
Map Stop: 207.30 cM
Features by Type:
13 RFLP
506 Contig
4 AFLP
2 EST
87 SNP
612 Total

Map Features

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Items 1 to 25 of 612.       of 25 | Next
Pinaceae - INRA_Pinaceae_composite_2015 - LG2
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
6517 SNP 175.70 No other positions
AFLP_4 AFLP 53.00 Pinaceae - INRA_Pinaceae_composite_2016 - LG2 AFLP_4 AFLP 53.00 (cM) Automated name-based View Maps
GQ0205-C11.1.485 SNP 0.00 Pinaceae - INRA_Pinaceae_composite_2016 - LG2 GQ0205-C11.1.485 SNP 0.00 (cM) Automated name-based View Maps
PA0011 SNP 0.00 Pinaceae - INRA_Pinaceae_composite_2016 - LG9 PA0011 SNP 97.30 (cM) Automated name-based View Maps
sp_v3.0_unigene32312 Contig 0.00 Pinaceae - INRA_Pinaceae_composite_2016 - LG5 sp_v3.0_unigene32312 Contig 73.80 (cM) Automated name-based View Maps
Pinaceae - INRA_Pinaceae_composite_2016 - LG2 sp_v3.0_unigene32312 Contig 0.00 (cM) Automated name-based View Maps
Pinaceae - INRA_Pinaceae_composite_2015 - LG5 sp_v3.0_unigene32312 Contig 73.80 (cM) Automated name-based View Maps
sp_v3.0_unigene34090 Contig 0.00 Pinaceae - INRA_Pinaceae_composite_2016 - LG2 sp_v3.0_unigene34090 Contig 0.00 (cM) Automated name-based View Maps
sp_v3.0_unigene2954 Contig 0.00 Pinaceae - INRA_Pinaceae_composite_2016 - LG2 sp_v3.0_unigene2954 Contig 0.00 (cM) Automated name-based View Maps
14232 SNP 0.00 No other positions
sp_v3.0_unigene2955 Contig 0.00 Pinaceae - INRA_Pinaceae_composite_2016 - LG2 sp_v3.0_unigene2955 Contig 0.00 (cM) Automated name-based View Maps
sp_v3.0_unigene1536 Contig 0.00 Pinaceae - INRA_Pinaceae_composite_2016 - LG2 sp_v3.0_unigene1536 Contig 0.00 (cM) Automated name-based View Maps
sp_v3.0_unigene20841 Contig 0.00 Pinaceae - INRA_Pinaceae_composite_2016 - LG2 sp_v3.0_unigene20841 Contig 0.00 (cM) Automated name-based View Maps
snp2-7707-02-387 SNP 0.00 Pinaceae - INRA_Pinaceae_composite_2016 - LG2 snp2-7707-02-387 SNP 0.00 (cM) Automated name-based View Maps
sp_v3.0_unigene17812 Contig 0.60 Pinaceae - INRA_Pinaceae_composite_2016 - LG2 sp_v3.0_unigene17812 Contig 0.60 (cM) Automated name-based View Maps
BX252178-119 SNP 0.60 Pinaceae - INRA_Pinaceae_composite_2016 - LG2 BX252178-119 SNP 0.60 (cM) Automated name-based View Maps
sp_v3.0_unigene118811 Contig 0.60 Pinaceae - INRA_Pinaceae_composite_2016 - LG2 sp_v3.0_unigene118811 Contig 0.60 (cM) Automated name-based View Maps
sp_v3.0_unigene8829 Contig 0.70 Pinaceae - INRA_Pinaceae_composite_2016 - LG2 sp_v3.0_unigene8829 Contig 0.70 (cM) Automated name-based View Maps
sp_v3.0_unigene10435 Contig 1.10 Pinaceae - INRA_Pinaceae_composite_2016 - LG2 sp_v3.0_unigene10435 Contig 1.10 (cM) Automated name-based View Maps
sp_v3.0_unigene22662 Contig 1.30 Pinaceae - INRA_Pinaceae_composite_2016 - LG2 sp_v3.0_unigene22662 Contig 1.30 (cM) Automated name-based View Maps
sp_v3.0_unigene1460 Contig 1.50 Pinaceae - INRA_Pinaceae_composite_2016 - LG2 sp_v3.0_unigene1460 Contig 1.50 (cM) Automated name-based View Maps
sp_v3.0_unigene14642 Contig 1.50 Pinaceae - INRA_Pinaceae_composite_2016 - LG2 sp_v3.0_unigene14642 Contig 1.50 (cM) Automated name-based View Maps
sp_v3.0_unigene17855 Contig 1.50 Pinaceae - INRA_Pinaceae_composite_2016 - LG2 sp_v3.0_unigene17855 Contig 1.50 (cM) Automated name-based View Maps
PGLM2-0619 SNP 1.90 Pinaceae - INRA_Pinaceae_composite_2016 - LG2 PGLM2-0619 SNP 1.90 (cM) Automated name-based View Maps
sp_v3.0_unigene142280 Contig 2.00 Pinaceae - INRA_Pinaceae_composite_2016 - LG2 sp_v3.0_unigene142280 Contig 2.00 (cM) Automated name-based View Maps
sp_v3.0_unigene33305 Contig 3.20 Pinaceae - INRA_Pinaceae_composite_2016 - LG2 sp_v3.0_unigene33305 Contig 3.20 (cM) Automated name-based View Maps
sp_v3.0_unigene37166 Contig 3.40 Pinaceae - INRA_Pinaceae_composite_2016 - LG2 sp_v3.0_unigene37166 Contig 3.40 (cM) Automated name-based View Maps

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