CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-F2_H12_2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG7
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - F2_H12_2012 [ View Map Set Info ]
Map Name: LG7
Map Start: 0.00 cM
Map Stop: 142.08 cM
Features by Type:
98 SNP
98 Total

Map Features

Restrict by Map:
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Items 1 to 25 of 98.       of 4 | Next
Pinus pinaster - F2_H12_2012 - LG7
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
m1246 SNP 0.00 Pinus pinaster - INIA_INRA2012 - LG7 m1246 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG7 m1246 SNP 0.00 (cM) Automated name-based View Maps
m694 SNP 1.18 Pinus pinaster - INIA_composite_2012 - LG7 m694 SNP 5.22 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG7 m694 SNP 1.63 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG7 m694 SNP 1.18 (cM) Automated name-based View Maps
F51TW9001A0RML SNP 1.63 Pinus pinaster - INIA_composite_2012 - LG7 F51TW9001A0RML SNP 7.83 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG7 F51TW9001A0RML SNP 4.24 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG7F F51TW9001A0RML (2.5/10) SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG7M F51TW9001A0RML (0/11) SNP 1.87 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG7 F51TW9001A0RML SNP 1.63 (cM) Automated name-based View Maps
FN695545 SNP 1.63 Pinus pinaster - G2_G2F_2012 - LG7F FN695545 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG7 FN695545 SNP 7.83 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG7 FN695545 SNP 1.63 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG7 FN695545 SNP 4.24 (cM) Automated name-based View Maps
BX251816 SNP 1.76 Pinus pinaster - INIA_composite_2012 - LG7 BX251816 SNP 0.05 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG7F BX251816 (0/12) SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG7M BX251816 (0/11) SNP 1.87 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG7 BX251816 SNP 1.76 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG7 BX251816 SNP 4.24 (cM) Automated name-based View Maps
m563 SNP 1.90 Pinus pinaster - G2_G2M_2012 - LG7M m563 (0/11) SNP 1.87 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG7 m563 SNP 1.90 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG7 m563 SNP 4.38 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG7F m563 (2.5/10) SNP 0.00 (cM) Automated name-based View Maps
F51TW9002FVR6I SNP 2.16 Pinus pinaster - INIA_composite_2012 - LG7 F51TW9002FVR6I SNP 14.49 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG7 F51TW9002FVR6I SNP 11.61 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG7M F51TW9002FVR6I (0/12) SNP 1.87 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG7 F51TW9002FVR6I SNP 2.16 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG7F F51TW9002FVR6I (0/12) SNP 0.00 (cM) Automated name-based View Maps
BX680463 SNP 2.97 Pinus pinaster - INIA_composite_2012 - LG7 BX680463 SNP 16.29 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG7 BX680463 SNP 2.97 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG7 BX680463 SNP 12.70 (cM) Automated name-based View Maps
m237 SNP 7.28 Pinus pinaster - INIA_INRA2012 - LG7 m237 SNP 4.08 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG7 m237 SNP 7.28 (cM) Automated name-based View Maps
BX253196 SNP 8.47 Pinus pinaster - INRA_composite_2012 - LG7 BX253196 SNP 8.47 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG7 BX253196 SNP 20.83 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG7 BX253196 SNP 17.42 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG7F BX253196 SNP 4.92 (cM) Automated name-based View Maps
BX000576 SNP 8.47 Pinus pinaster - INRA_composite_2012 - LG7 BX000576 SNP 8.47 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG7 BX000576 SNP 15.79 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG7M BX000576 SNP 3.11 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG7 BX000576 SNP 12.38 (cM) Automated name-based View Maps
F5X2MQL01BYO0K SNP 14.99 Pinus pinaster - INRA_composite_2012 - LG7 F5X2MQL01BYO0K SNP 14.99 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG7F F5X2MQL01BYO0K (0/12) SNP 7.37 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG7 F5X2MQL01BYO0K SNP 24.03 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG7M F5X2MQL01BYO0K (0/11.5) SNP 1.87 (cM) Automated name-based View Maps
CT578566 SNP 20.04 Pinus pinaster - INIA_composite_2012 - LG7 CT578566 SNP 27.62 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG7 CT578566 SNP 24.03 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG7M CT578566 (0/11.5) SNP 8.19 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG7 CT578566 SNP 20.04 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG7F CT578566 (2.5/10) SNP 7.37 (cM) Automated name-based View Maps
BX677540 SNP 20.04 Pinus pinaster - INRA_composite_2012 - LG7 BX677540 SNP 16.04 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG7 BX677540 SNP 27.62 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG7M BX677540 SNP 8.19 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG7 BX677540 SNP 24.03 (cM) Automated name-based View Maps
AL749949 SNP 24.78 Pinus pinaster - INRA_composite_2012 - LG7 AL749949 SNP 24.78 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG7 AL749949 SNP 26.38 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG7F AL749949 SNP 26.74 (cM) Automated name-based View Maps
AL750692 SNP 24.78 Pinus pinaster - INIA_INRA2012 - LG7 AL750692 SNP 23.04 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG7 AL750692 SNP 20.04 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG7M AL750692 SNP 9.46 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG7 AL750692 SNP 26.63 (cM) Automated name-based View Maps
F51TW9001BDTOZ SNP 27.88 Pinus pinaster - INRA_composite_2012 - LG7 F51TW9001BDTOZ SNP 24.78 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG7 F51TW9001BDTOZ SNP 26.38 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG7M F51TW9001BDTOZ SNP 16.94 (cM) Automated name-based View Maps
F51TW9002G0W49 SNP 27.88 Pinus pinaster - G2_G2M_2012 - LG7M F51TW9002G0W49 SNP 16.94 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG7 F51TW9002G0W49 SNP 24.78 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG7 F51TW9002G0W49 SNP 26.38 (cM) Automated name-based View Maps
CT574693 SNP 27.88 Pinus pinaster - INIA_INRA2012 - LG7 CT574693 SNP 26.38 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG7 CT574693 SNP 27.13 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG7M CT574693 SNP 21.96 (cM) Automated name-based View Maps
F51TW9001BD81M SNP 27.88 Pinus pinaster - INRA_composite_2012 - LG7 F51TW9001BD81M SNP 24.78 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG7 F51TW9001BD81M SNP 26.38 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG7M F51TW9001BD81M SNP 16.94 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG7 F51TW9001BD81M SNP 31.90 (cM) Automated name-based View Maps
AL750123 SNP 27.88 Pinus pinaster - INRA_composite_2012 - LG7 AL750123 SNP 24.78 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG7M AL750123 SNP 16.94 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG7 AL750123 SNP 24.03 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG7 AL750123 SNP 26.58 (cM) Automated name-based View Maps
F51TW9002GQOP6 SNP 29.46 Pinus pinaster - G2_G2M_2012 - LG7M F51TW9002GQOP6 SNP 28.44 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG7 F51TW9002GQOP6 SNP 28.83 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG7 F51TW9002GQOP6 SNP 28.08 (cM) Automated name-based View Maps
FN695233 SNP 30.25 Pinus pinaster - INIA_INRA2012 - LG7 FN695233 SNP 28.08 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG7F FN695233 (3/9) SNP 26.74 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG7 FN695233 SNP 28.83 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG7M FN695233 (0/11) SNP 41.32 (cM) Automated name-based View Maps
F51TW9001ANHGA SNP 35.11 Pinus pinaster - G2_G2M_2012 - LG7M F51TW9001ANHGA (0/11.5) SNP 28.44 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG7 F51TW9001ANHGA SNP 32.94 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG7 F51TW9001ANHGA SNP 33.69 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG7F F51TW9001ANHGA (0/11) SNP 32.42 (cM) Automated name-based View Maps
SNPnew102 SNP 41.97 Pinus pinaster - INRA_composite_2012 - LG7 SNPnew102 SNP 40.55 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG7 SNPnew102 SNP 39.37 (cM) Automated name-based View Maps

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