CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-F2_H12_2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG8_1
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - F2_H12_2012 [ View Map Set Info ]
Map Name: LG8_1
Map Start: 0.00 cM
Map Stop: 35.70 cM
Features by Type:
24 SNP
24 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 24 of 24.
Pinus pinaster - F2_H12_2012 - LG8_1
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
F51TW9001CTLDD SNP 0.00 Pinus pinaster - G2_G2M_2012 - LG8M F51TW9001CTLDD SNP 0.06 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 F51TW9001CTLDD SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 F51TW9001CTLDD SNP 0.00 (cM) Automated name-based View Maps
SNPnew29 SNP 0.08 Pinus pinaster - INRA_composite_2012 - LG8 SNPnew29 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 SNPnew29 SNP 0.00 (cM) Automated name-based View Maps
BX250815 SNP 0.66 Pinus pinaster - INRA_composite_2012 - LG8 BX250815 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG8 BX250815 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 BX250815 SNP 0.00 (cM) Automated name-based View Maps
BX251432 SNP 3.89 Pinus pinaster - INIA_INRA2012 - LG8 BX251432 SNP 3.23 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 BX251432 SNP 3.23 (cM) Automated name-based View Maps
BX677519 SNP 8.20 Pinus pinaster - INRA_composite_2012 - LG8 BX677519 SNP 7.54 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 BX677519 SNP 5.85 (cM) Automated name-based View Maps
CR393140 SNP 9.98 Pinus pinaster - INIA_INRA2012 - LG8 CR393140 SNP 5.85 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 CR393140 SNP 9.32 (cM) Automated name-based View Maps
AL750825 SNP 10.75 Pinus pinaster - G2_G2F_2012 - LG8F AL750825 SNP 1.41 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG8M AL750825 SNP 7.27 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 AL750825 SNP 10.80 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 AL750825 SNP 6.56 (cM) Automated name-based View Maps
BX249662 SNP 10.75 Pinus pinaster - INRA_composite_2012 - LG8 BX249662 SNP 10.09 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 BX249662 SNP 5.85 (cM) Automated name-based View Maps
F51TW9001ALR0F SNP 12.05 Pinus pinaster - INRA_composite_2012 - LG8 F51TW9001ALR0F SNP 11.39 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG8F F51TW9001ALR0F (0/11) SNP 1.41 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG8M F51TW9001ALR0F (8/6.5) SNP 3.62 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 F51TW9001ALR0F SNP 16.42 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG8 F51TW9001ALR0F SNP 28.36 (cM) Automated name-based View Maps
BX679768 SNP 15.38 Pinus pinaster - INIA_INRA2012 - LG8 BX679768 SNP 19.75 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 BX679768 SNP 14.72 (cM) Automated name-based View Maps
CT579997 SNP 17.86 Pinus pinaster - INIA_INRA2012 - LG8 CT579997 SNP 22.23 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 CT579997 SNP 17.20 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG8F CT579997 SNP 6.40 (cM) Automated name-based View Maps
FN256952 SNP 17.86 Pinus pinaster - G2_G2F_2012 - LG8F FN256952 SNP 6.40 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 FN256952 SNP 17.20 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 FN256952 SNP 22.23 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG8 FN256952 SNP 32.17 (cM) Automated name-based View Maps
BX254424 SNP 17.86 Pinus pinaster - INIA_INRA2012 - LG8 BX254424 SNP 22.23 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 BX254424 SNP 17.20 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG8F BX254424 (0/12.5) SNP 6.40 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG8M BX254424 (2.5/11) SNP 21.82 (cM) Automated name-based View Maps
AL749591 SNP 18.67 Pinus pinaster - INIA_INRA2012 - LG8 AL749591 SNP 23.04 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 AL749591 SNP 18.01 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG8 AL749591 SNP 30.69 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG8F AL749591 (0/12) SNP 6.40 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG8M AL749591 (2.5/10) SNP 21.82 (cM) Automated name-based View Maps
BX249658 SNP 20.32 Pinus pinaster - INRA_composite_2012 - LG8 BX249658 SNP 19.66 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 BX249658 SNP 23.36 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG8F BX249658 SNP 7.66 (cM) Automated name-based View Maps
FN706172 SNP 21.92 Pinus pinaster - INIA_INRA2012 - LG8 FN706172 SNP 24.84 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 FN706172 SNP 21.26 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG8 FN706172 SNP 32.17 (cM) Automated name-based View Maps
BX250004 SNP 22.74 Pinus pinaster - INRA_composite_2012 - LG8 BX250004 SNP 22.08 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 BX250004 SNP 25.23 (cM) Automated name-based View Maps
F51TW9001B8Q0H SNP 25.99 Pinus pinaster - G2_G2M_2012 - LG8M F51TW9001B8Q0H (0/12) SNP 21.82 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG8F F51TW9001B8Q0H (0/12) SNP 12.67 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG8 F51TW9001B8Q0H SNP 32.16 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 F51TW9001B8Q0H SNP 28.17 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 F51TW9001B8Q0H SNP 25.33 (cM) Automated name-based View Maps
F51TW9001AM6TF SNP 25.99 Pinus pinaster - G2_G2F_2012 - LG8F F51TW9001AM6TF SNP 12.67 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 F51TW9001AM6TF SNP 25.33 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG8 F51TW9001AM6TF SNP 32.17 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 F51TW9001AM6TF SNP 28.17 (cM) Automated name-based View Maps
CT578868 SNP 28.32 Pinus pinaster - INIA_INRA2012 - LG8 CT578868 SNP 28.17 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 CT578868 SNP 25.33 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG8M CT578868 SNP 21.82 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG8 CT578868 SNP 32.17 (cM) Automated name-based View Maps
SNPnew126 SNP 28.90 Pinus pinaster - INRA_composite_2012 - LG8 SNPnew126 SNP 28.24 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 SNPnew126 SNP 28.17 (cM) Automated name-based View Maps
BX251930 SNP 29.31 Pinus pinaster - INRA_composite_2012 - LG8 BX251930 SNP 28.65 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 BX251930 SNP 28.17 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG8 BX251930 SNP 32.17 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG8F BX251930 SNP 16.64 (cM) Automated name-based View Maps
F51TW9001A0TXI SNP 30.38 Pinus pinaster - INIA_INRA2012 - LG8 F51TW9001A0TXI SNP 28.17 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 F51TW9001A0TXI SNP 29.72 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG8M F51TW9001A0TXI SNP 28.26 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG8 F51TW9001A0TXI SNP 32.17 (cM) Automated name-based View Maps
SNPnew62 SNP 35.70 Pinus pinaster - INRA_composite_2012 - LG8 SNPnew62 SNP 32.71 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 SNPnew62 SNP 31.16 (cM) Automated name-based View Maps

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