CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-F2_H12_2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG8_2
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - F2_H12_2012 [ View Map Set Info ]
Map Name: LG8_2
Map Start: 0.00 cM
Map Stop: 96.69 cM
Features by Type:
46 SNP
46 Total

Map Features

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Items 1 to 25 of 46.       of 2 | Next
Pinus pinaster - F2_H12_2012 - LG8_2
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
BX677706 SNP 0.00 Pinus pinaster - INIA_INRA2012 - LG8 BX677706 SNP 48.95 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 BX677706 SNP 50.50 (cM) Automated name-based View Maps
BX679170 SNP 9.17 Pinus pinaster - G2_G2M_2012 - LG8M BX679170 SNP 62.79 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 BX679170 SNP 59.67 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 BX679170 SNP 58.12 (cM) Automated name-based View Maps
BX248867 SNP 9.17 Pinus pinaster - INIA_composite_2012 - LG8 BX248867 SNP 54.60 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG8M BX248867 SNP 61.59 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 BX248867 SNP 58.12 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 BX248867 SNP 59.67 (cM) Automated name-based View Maps
BX250849 SNP 18.56 Pinus pinaster - INIA_INRA2012 - LG8 BX250849 SNP 63.90 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 BX250849 SNP 65.45 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG8M BX250849 SNP 63.99 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG8 BX250849 SNP 68.51 (cM) Automated name-based View Maps
BX251882 SNP 18.56 Pinus pinaster - INIA_composite_2012 - LG8 BX251882 SNP 63.35 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 BX251882 SNP 59.67 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 BX251882 SNP 58.12 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG8F BX251882 SNP 39.32 (cM) Automated name-based View Maps
AL749783 SNP 24.34 Pinus pinaster - INRA_composite_2012 - LG8 AL749783 SNP 65.45 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 AL749783 SNP 65.11 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG8 AL749783 SNP 81.63 (cM) Automated name-based View Maps
CT577574 SNP 24.34 Pinus pinaster - INRA_composite_2012 - LG8 CT577574 SNP 65.45 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG8 CT577574 SNP 82.99 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG8M CT577574 SNP 63.99 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 CT577574 SNP 65.11 (cM) Automated name-based View Maps
F51TW9001B9BLW SNP 24.34 Pinus pinaster - G2_G2F_2012 - LG8F F51TW9001B9BLW (4/11) SNP 58.01 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 F51TW9001B9BLW SNP 63.90 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG8M F51TW9001B9BLW (0/14) SNP 63.99 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 F51TW9001B9BLW SNP 65.45 (cM) Automated name-based View Maps
CT577081 SNP 24.34 Pinus pinaster - INIA_INRA2012 - LG8 CT577081 SNP 65.11 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 CT577081 SNP 65.45 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG8 CT577081 SNP 83.83 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG8F CT577081 (0/13.5) SNP 58.01 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG8M CT577081 (4/10) SNP 63.99 (cM) Automated name-based View Maps
SNPnew135 SNP 24.42 Pinus pinaster - INIA_INRA2012 - LG8 SNPnew135 SNP 66.64 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 SNPnew135 SNP 65.53 (cM) Automated name-based View Maps
F51TW9001AI55E SNP 29.51 Pinus pinaster - INIA_composite_2012 - LG8 F51TW9001AI55E SNP 81.63 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 F51TW9001AI55E SNP 71.85 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 F51TW9001AI55E SNP 71.13 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG8F F51TW9001AI55E SNP 58.01 (cM) Automated name-based View Maps
BX680449 SNP 31.41 Pinus pinaster - G2_G2M_2012 - LG8M BX680449 (12/5.5) SNP 63.99 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG8 BX680449 SNP 84.41 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG8F BX680449 (0/10) SNP 62.84 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 BX680449 SNP 72.52 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 BX680449 SNP 73.24 (cM) Automated name-based View Maps
BX255358 SNP 33.74 Pinus pinaster - INIA_composite_2012 - LG8 BX255358 SNP 88.31 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG8F BX255358 (0/13.5) SNP 62.84 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 BX255358 SNP 74.85 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 BX255358 SNP 75.57 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG8M BX255358 (8/8) SNP 63.99 (cM) Automated name-based View Maps
F51TW9001B2AXP SNP 34.85 Pinus pinaster - INRA_composite_2012 - LG8 F51TW9001B2AXP SNP 75.96 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 F51TW9001B2AXP SNP 79.77 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG8F F51TW9001B2AXP SNP 62.84 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG8 F51TW9001B2AXP SNP 92.03 (cM) Automated name-based View Maps
F51TW9001AVVHH SNP 35.69 Pinus pinaster - G2_G2F_2012 - LG8F F51TW9001AVVHH (0/13) SNP 62.84 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 F51TW9001AVVHH SNP 76.80 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG8 F51TW9001AVVHH SNP 95.01 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 F51TW9001AVVHH SNP 82.65 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG8M F51TW9001AVVHH (9/7.5) SNP 63.99 (cM) Automated name-based View Maps
SNPnew103 SNP 37.22 Pinus pinaster - INRA_composite_2012 - LG8 SNPnew103 SNP 78.33 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 SNPnew103 SNP 84.18 (cM) Automated name-based View Maps
CT583276 SNP 38.77 Pinus pinaster - G2_G2F_2012 - LG8F CT583276 SNP 65.34 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 CT583276 SNP 85.32 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 CT583276 SNP 78.45 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG8 CT583276 SNP 97.68 (cM) Automated name-based View Maps
CT582977 SNP 39.64 Pinus pinaster - INIA_INRA2012 - LG8 CT582977 SNP 85.86 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG8 CT582977 SNP 97.68 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 CT582977 SNP 78.45 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG8F CT582977 SNP 65.34 (cM) Automated name-based View Maps
BX677221 SNP 42.68 Pinus pinaster - G2_G2F_2012 - LG8F BX677221 SNP 68.78 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 BX677221 SNP 89.31 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 BX677221 SNP 81.90 (cM) Automated name-based View Maps
F51TW9001EKRXD SNP 51.67 Pinus pinaster - INRA_composite_2012 - LG8 F51TW9001EKRXD SNP 90.89 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG8F F51TW9001EKRXD (0/12) SNP 72.26 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG8M F51TW9001EKRXD (7/8) SNP 91.35 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 F51TW9001EKRXD SNP 98.30 (cM) Automated name-based View Maps
BX251825 SNP 59.10 Pinus pinaster - INRA_composite_2012 - LG8 BX251825 SNP 97.88 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 BX251825 SNP 105.29 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG8F BX251825 SNP 84.76 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG8 BX251825 SNP 112.79 (cM) Automated name-based View Maps
F51TW9001C3TDM SNP 60.88 Pinus pinaster - INIA_INRA2012 - LG8 F51TW9001C3TDM SNP 106.68 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 F51TW9001C3TDM SNP 99.27 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG8F F51TW9001C3TDM SNP 84.76 (cM) Automated name-based View Maps
FN692715 SNP 62.51 Pinus pinaster - INIA_composite_2012 - LG8 FN692715 SNP 117.82 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG8 FN692715 SNP 108.70 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 FN692715 SNP 101.29 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG8M FN692715 (4.5/10) SNP 91.35 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG8F FN692715 (2/11) SNP 84.76 (cM) Automated name-based View Maps
AL750061 SNP 63.35 Pinus pinaster - INIA_INRA2012 - LG8 AL750061 SNP 113.43 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG8 AL750061 SNP 122.55 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG8F AL750061 SNP 91.27 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG8 AL750061 SNP 103.03 (cM) Automated name-based View Maps
SNPnew36 SNP 65.50 No other positions

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